1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAGATCTCAGAATTTTATGAACAAATCAACAAATAAGCTTTCTGCAGTCGGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAGgtatgtttattatgatactcttttatcaaatgatattgctgctattcaaacagcatcagtgtgaacaacttttgaaagttaaactagttttacctggaac...
species | Vitis vinifera |
transcript | Vv14s0060g01580.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAG GTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGCEST: gi|71874154|gb|DT023209.1|DT023209
genomic: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAGgtatgtttat ... ccaattgcagGTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGC
EST: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAG GTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGCEST: gi|33402981|gb|CF208608.1|CF208608
genomic: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAGgtatgtttat ... ccaattgcagGTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGC
EST: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAG GTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGCEST: gi|110384652|gb|EC949105.1|EC949105
genomic: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAGgtatgtttat ... ccaattgcagGTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGC
EST: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAG GTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGCEST: gi|110388299|gb|EC953034.1|EC953034
genomic: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAGgtatgtttat ... ccaattgcagGTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGC
EST: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAG GTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGCEST: gi|110362563|gb|EC926106.1|EC926106
genomic: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAGgtatgtttat ... ccaattgcagGTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGC
EST: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAG GTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGCEST: gi|34415833|gb|CF414587.1|CF414587
genomic: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAGgtatgtttat ... ccaattgcagGTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGC
EST: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAG GTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGCEST: gi|254914412|gb|GR906513.1|GR906513
genomic: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAGgtatgtttat ... ccaattgcagGTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGC
EST: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAG GTTGGGTAAAGATTTTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGC
genomic: GGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAGgtatgtttat ... ccaattgcagGTTGGGTAAAGATATTCCTTCAAACACCAACTCTGGGCTTTTCAGATGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGATCTCAGAATTTTATGAACAAATCAACAAATAAGCTTTCTGCAGTCGGGGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTGCGGAAAGgtatgtttattatgatactcttttatcaaatgatattgctgctattcaaacagcatcagtgtgaacaacttttgaaagttaaactagttttacctggaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaac