Sequence
atgc intronic sequence ATGC exonic sequenceTCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAGgtattgcccacttaaaaaacatctgtaaatattttggtctcctgcatgtaatccttttattcttaaaaatataaaaggtcaactaagttactaacagcta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 7
TCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAGgtat--tgcccacttaaaaaacatctgtaaatattttggtctcctgcatgtaatc--cttttattcttaaaaatataaaaggtcaactaagttactaacagcta
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CCATCCATCACCATCGGTGCTTATACCTGCTCTACGAACTGTTGGGAATATTGTCACTGGAGATGATTTGCAAACTCAGgtgggatttcaagtttggtggctttcttctatgtcc-ggcaaactttatgcaattagttatcagagctaaatttgtgtggatatgattat-ttattatgggt--
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 7
TCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAGgtattgcccacttaaaaaacatctgtaaatattttggtctcctgca-tgtaatccttttattcttaaaaatataa-aaggtcaactaagttactaacagcta--
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GCACCCATCCCCTTCAGTGCTAATTCCTGCTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACTCAGgtattttg---tttaggaatgtctcttatggttgttatgtacagtaatgttacttttcctttctacattacagaataaggaaaacagtgatagca-tgactatt
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 7
TCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAGgtattgcccacttaaaaaacatctgtaaatattttggtctcctgcatgtaatccttttattcttaaaaatataa-aaggtcaactaagttacta--acagcta
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GCACCCATCCCCTTCAGTGCTAATTCCTGCTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAGgtattatg---ttcaggaatgtctcttatggttatgtacagtaatattttactttgcctttctacattacagaataaggaaaacagtgataacatgactatta
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 7
TCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAGgtatt--gcccacttaaaaaacatctgtaaatattttggtctcctgcatgtaa-tccttttattcttaaaaatataaaaggtcaactaagttactaacagcta
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GCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACCGTTGGAAATATTGTTACTGGAGATGATTTGCAGACAGAGgtattaagttcacgagtttctcagggcttgttttttagattcttaatatacaggttactatatgtctctagctaatctgtgttaacggatatcgtaatag---
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ38593 (Selaginella moellendorffii), 5'ss of exon 7
TCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAGgtattgcccacttaaaaaacatctgtaaatattttggtctcctgcatgtaatccttttattcttaaaaatataaaaggtcaactaagttactaacagcta
| || || || |||||| |||||||| ||||| ||||| ||||||||||| ||||| || ||| | ||||| |||||| | | |||||| || || ||| | | ||| | ||| ||||||
GTATCCTTCACCGAATGTTCTTATTCCTGCTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGgtaaacttga--aacggaacatcc-tagatgtttcttacgcttgcctttaaa---tttatttcag-----------------------------------
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ31557 (Selaginella moellendorffii), 5'ss of exon 7
TCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAGgtattgcccacttaaaaaacatctgtaaatattttggtctcctgcatgtaatccttttattcttaaaaatataaaaggtcaactaagttactaacagcta
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GTATCCTTCACCGAATGTTCTCATTCCTGCTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGgtaaacttga--aacggaacatcc-tagatatttcttacgcctgtctttaaa---tttatttccag----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110359173|gb|EC920237.1|EC920237EST: CACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAG TGCATAATCAACCATCAGGCTCTCCCTTGCCTTCTGAACCTGTTGACCAAT
genomic: CACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAGgtattgccca ... gcttctccagTGCATAATCAACCATCAGGCTCTCCCTTGCCTTCTGAACCTGTTGACCAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAGgtattgcccacttaaaaaacatctgtaaatattttggtctcctgcatgtaatccttttattcttaaaaatataaaaggtcaactaagttactaacagcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaggt