1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTGCCATATCAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAGgtaacattgatctttagcctaagccattccattcttcagactgagttgagttgtcttgatcctgagctcctattctgatctggttctgcag
species | Vitis vinifera |
transcript | Vv14s0060g01280.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAG GCCGGTGCTTCTGAGCATGCTCGGAGTTTAGGCCCCCAAGGGGTCAGACCCEST: gi|30126995|gb|CB912334.1|CB912334
genomic: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAGgtaacattga ... ggttctgcagGCCGGTGCTTCTGAGCATGCTCGGAGTCTAGGCCCC-AAGGGGTCAGACCC
EST: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAG GCCGGTGCTTCTGAGCATGCTCGGAGTTTAGGCCCCAAGGGGTCAGACCCCEST: gi|110710234|gb|EE086401.1|EE086401
genomic: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAGgtaacattga ... ggttctgcagGCCGGTGCTTCTGAGCATGCTCGGAGTCTAGGCCCCAAGGGGTCAGACCCC
EST: CAACTTCCAACACAGGTGGGGCATGGGAAAATGCAAAGAAATATATAGAA GCCGGTGCTTCTGAGCAAGCTCAGAAATCAAGGCCCCAATGGGGTCAAACCEST: gi|110718290|gb|EE094955.1|EE094955
genomic: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAGgtaacattga ... ggttctgcagGCCGGTGCTTCTGAGCATGCTCGGAG-TCTAGGCCCCAA-GGGGTCAGACC
EST: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATANAG GCCGGTGCTTCTGAGCATGCTCGGAGTCTAGGCCCCAAAGGGTCAGACCCCEST: gi|110731040|gb|EE108804.1|EE108804
genomic: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAGgtaacattga ... ggttctgcagGCCGGTGCTTCTGAGCATGCTCGGAGTCTAGGCCCCAAGGGGTCAGACCCC
EST: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAG GCCGGTGCTTCTGAGCATGCTCGGAGTCTAAGCCCCAAGGGGTCAGACCCCEST: gi|110703428|gb|EE080264.1|EE080264
genomic: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAGgtaacattga ... ggttctgcagGCCGGTGCTTCTGAGCATGCTCGGAGTCTAGGCCCCAAGGGGTCAGACCCC
EST: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAG GCCGGTGCTTCTGAGCATGCTCGGAGTCTAAGCCCCAAGGGGTCAGACCCCEST: gi|110376741|gb|EC941814.1|EC941814
genomic: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAGgtaacattga ... ggttctgcagGCCGGTGCTTCTGAGCATGCTCGGAGTCTAGGCCCCAAGGGGTCAGACCCC
EST: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAG GCCGGTGCTTCTGAGCATGCTCGGAGTCTAGGCCCCAAGGGGTCAGACCCCEST: gi|34550177|gb|CF518395.1|CF518395
genomic: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAGgtaacattga ... ggttctgcagGCCGGTGCTTCTGAGCATGCTCGGAGTCTAGGCCCCAAGGGGTCAGACCCC
EST: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAG GCCGGTGCTTCTGAGCATGCTCGGAGTTTAGGCCCCAAGGGGTCAGACCCCEST: gi|18458099|gb|BM436377.1|BM436377
genomic: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAGgtaacattga ... ggttctgcagGCCGGTGCTTCTGAGCATGCTCGGAGTCTAGGCCCCAAGGGGTCAGACCCC
EST: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAG GCCGGTGCTTCTGAGCATGCTCGGAGTTTAGGCCCCAAGGGGTCAGACCCC
genomic: CAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAGgtaacattga ... ggttctgcagGCCGGTGCTTCTGAGCATGCTCGGAGTCTAGGCCCCAAGGGGTCAGACCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCCATATCAGCTTCCAACACAGGTGGGGCATGGGATAATGCAAAGAAATATATAGAGgtaacattgatctttagcctaagccattccattcttcagactgagttgagttgtcttgatcctgagctcctattctgatctggttctgcag
- - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - AAGAAA