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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgtttttgtttcatctcctcctcttcctggtttattattgtcttgcattttggttgggatgtgttttaattttgttttatctgtgtttgatag

Basic information

species Vitis vinifera
transcript Vv14s0060g00600.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 7
GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgtttt-tgt-------ttcatctcctcctcttcctggtttat-tattgtcttgcattttggttgggat-------------gtgttttaattttgttttatctg-tgtttgatag
|| ||||| || || |||||| ||||  |||||||||||||||||||||||||||||||  ||||| |||       |   | |     | || |||  || | ||   ||  |||||    |||  |              ||| ||| |  ||||||  |||    ||||| ||
GTTAATCCGCACACTCACCAGGTTAAAATATGTGACTTTGGAAGTGCAAAAGTCTTGgtatgttttatgtacgtatgtgtgtgtgtgtgtgtttctgtcttttctaccttcacgcattcctcttgaaacttcagttatctgggtggtttcaccttgtttgctctaacctttgacag

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G41420.3 (Glycine max), 5'ss of exon 7
GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgtttt---------tgtttcatctcctcctcttcctggttt--attattg-tcttgca-ttttggttggg-atgtgttttaattttgttttatct--gtgtttgatag
|| ||||||||||| |||||| | ||  |||| ||||||||||||||||||||||||||  |||||         |||||  | | ||    || ||   ||  |  |||| ||||| |  |   ||||     ||| ||| |  ||||||  |||     ||||| ||
GTTAATCCACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTGgtatgttttatgtatgtgtgtttgtttttctgtattttctaccttcaaccattgctcttgaaactccagttgtctgggtggtttcaccttgtttgctcttgacctttgacag

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G22600.3 (Glycine max), 5'ss of exon 7
GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgtt---tttgttt-catctcctcctcttcctggttta-ttattgtcttgcatt-----------ttggttgggatgtgttttaattttgttttatctgtgtttgatag------------
|| |||||||| || |||||| ||||  |||||||||||||||||||||| || ||||| ||||   | ||||  ||| ||  || ||||||  || | | |||    | ||||           ||   |||| |   || || |||| ||||  || |||||| |              
GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttatatatgttggcatttctgccccttcctccttaaatcattcctcttcattcaacctcttgttttcctgggttagattgtagttttatttttcct-tgtttggtctgacctttgacag

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G28530.1 (Glycine max), 5'ss of exon 7
GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgtt---tttgttt-catctcctcctcttcctggttta-ttattgtcttgcatt-----------------ttggttgggatgtgttttaattttgttttatctgtgtttgatag-------
|| |||||||| || |||||| ||||  |||||||||||||||||||||| || ||||| ||||   | ||| | ||| ||  || ||||||  || | |||||    | ||||                 |||||| |  |||  ||| | |||   |||| ||   ||||          
GTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttatatatgtctgcatttcagccccttcctccttaaattattcctcttcattcaacctttctgttttccttggttagattgtagttttacttttccttatttggtcttgacctttgacag

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgtttttgtttcatctcctcctcttcctggtttatt--attgtcttgcattttggttgggat--gtgttttaattttgttttatctgtgtttgatag-
|||||||| ||||| |||||||| || || ||||| ||||||||||| |||||  ||||| || | |  |  ||       | ||   |  ||      | |  || ||   | |  |  ||  ||||||      ||  |    || | | || || 
GTGAATCCTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAAGTGCTGgtgagtatctactggattagtgagtattttcgagttgcgcagtcgcattacagcgtcgaagcaatttgtgtttcggaaatgcgtgcgttgcggt-gacagg

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 6
GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgtttttgtttcatctcctcctcttcctggtttattatt-------gtcttgcattttggttgggatgtgttttaattttgttttatctgtgtttgatag
|||||||| || || || ||||| |||||||| |||||||||||||| ||||| |||||| | | |  |   || |       ||   | ||| |  ||       ||| |||| ||   | | ||  |        |    || |  | | |||  |  
GTGAATCCCCACACGCATCAGCTAAAGCTATGCGACTTTGGAAGTGCGAAAGTTTTGgtgagatgtgatgaaatgtttgtgatttgtggttttttcctttcacaaggtcatgcagttca-tagagagatagaagggctccagttgagatttttttttt--

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 7
GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgtttttg----tttcatctcctcctcttcctggtttattattgtcttgcattttggttgggatgtgttttaattttgttttatctgtgtttgatag
|| |||||||| || |||||||| ||||| ||||||||||| ||||| |||||||||||| ||  ||     |   |||        |     | | |||   || |     |||   ||| |        |                         
GTAAATCCACACACACACCAGCTCAAGCTCTGTGACTTTGGGAGTGCTAAAGTCTTGgtgggtgcttacaaataggatccttggaattcagcagctgatttgcgtttcctgcttttcctggca-aaacaacag------------------------

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 7
GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgtttttg----tttcatctcctcctcttcctggtttattattgtcttgcattttggttgggatgtgttttaattttgttttatctgtgtttgatag
|| |||||||| || |||||||| ||||| ||||||||||| ||||| |||||||||||| ||  ||     |   |||        |     | | |||   || |     |||  |||| |        |                         
GTAAATCCACACACACACCAGCTCAAGCTCTGTGACTTTGGGAGTGCTAAAGTCTTGgtgggtgcttacaaataggatccttggaattcagcagctgatttgcgtttcctgcttttcttggcaaaacaaacag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30325615|gb|CD008877.1|CD008877
EST:     CACATACCCACCAGCTTAAGCTATGTGACTNTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|32270380|gb|CD719539.1|CD719539
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|32270854|gb|CD720013.1|CD720013
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|71862026|gb|DT011081.1|DT011081
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|71856504|gb|DT005559.1|DT005559
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|156737184|gb|EV241305.1|EV241305
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|161714435|gb|FC064434.1|FC064434
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30326170|gb|CD009432.1|CD009432
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCAAATATATCTTATATCTGCTCTA
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTA
EST: gi|34546808|gb|CF515040.1|CF515040
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|110700433|gb|EE078469.1|EE078469
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|161718942|gb|FC067353.1|FC067353
EST:     CACATACCC-CCAGCTTA-GCTATGTGACTTTG-AAGTGCAAA-GTCT-G                         GTAAA-GGGGA-CCCA-TATATC
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATC
EST: gi|110712249|gb|EE089658.1|EE089658
EST:     CACATACCCACCAGCTTAAGCTATGTGGCTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30256245|gb|CB972088.1|CB972088
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGAT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|349828876|gb|FQ419209.1|FQ419209
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30327244|gb|CD010506.1|CD010506
EST:     ACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTNG                         GTAAA-GGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGC
genomic: ACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTT-Ggtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGC
EST: gi|33405711|gb|CF211338.1|CF211338
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTGATCNGNGNACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|87584334|gb|DY473544.1|DY473544
EST:     CATACCCACCAGCTTAAGC--TGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|110424518|gb|EC990881.1|EC990881
EST:     TAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: TAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|110423991|gb|EC990344.1|EC990344
EST:     CAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30302437|gb|CB979231.1|CB979231
EST:     CACATACCCACCAGTTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30327832|gb|CD011094.1|CD011094
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|34543640|gb|CF511872.1|CF511872
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30136122|gb|CB921460.1|CB921460
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|71861763|gb|DT010818.1|DT010818
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30327902|gb|CD011164.1|CD011164
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTANAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30325367|gb|CD008629.1|CD008629
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|352789914|gb|FQ478729.1|FQ478729
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30325513|gb|CD008775.1|CD008775
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|110694879|gb|EE072256.1|EE072256
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|34547149|gb|CF515381.1|CF515381
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30325747|gb|CD009009.1|CD009009
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAGGGGGAACCCAATATATCTTATATCTGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCT
EST: gi|30325454|gb|CD008716.1|CD008716
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|33404123|gb|CF209750.1|CF209750
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCC
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|71864551|gb|DT013606.1|DT013606
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCA
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCA
EST: gi|110729460|gb|EE105432.1|EE105432
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30132732|gb|CB918071.1|CB918071
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|30129063|gb|CB914402.1|CB914402
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
EST: gi|71864720|gb|DT013775.1|DT013775
EST:     CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTG                         GTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT
genomic: CACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgttttt ... tgtttgatagGTAAAAGGGGAACCCAATATATCTTATATCTGCTCTAGATATTACAGGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAATCCACATACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCAAAAGTCTTGgtgcgtttttgtttcatctcctcctcttcctggtttattattgtcttgcattttggttgggatgtgttttaattttgttttatctgtgtttgatag

- - - - - - - - - - - - - - - - - - - TGGAAG