1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcatatctgttctactcatatttacgtttgacagtaaaatttcctgtcttgggtaattatcattcctatggtaggaattattagtgcaccaacc...
species | Vitis vinifera |
transcript | Vv14s0060g00550.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAGAGTATTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|33409351|gb|CF214978.1|CF214978
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTEST: gi|71870972|gb|DT020027.1|DT020027
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTT
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|110424854|gb|EC991228.1|EC991228
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|29783688|gb|CB350023.2|CB350023
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|33410181|gb|CF215808.1|CF215808
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|30253173|gb|CB970724.1|CB970724
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|30301408|gb|CB978202.1|CB978202
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|30256368|gb|CB972211.1|CB972211
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|33404234|gb|CF209861.1|CF209861
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|29783867|gb|CB350325.2|CB350325
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: TCGTTGGATGAAAAG ACAAGTGCATTC-TTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGEST: gi|71890536|gb|DT039591.1|DT039591
genomic: TCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCA-TCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTG
EST: CCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|71870674|gb|DT019729.1|DT019729
genomic: CCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|33401628|gb|CF207255.1|CF207255
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|156735476|gb|EV239597.1|EV239597
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGGTTTTGA-CCCCAAAAGACGCATCTGEST: gi|45771366|gb|CN007218.1|CN007218
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTG-TTTTGAACCCCAAAGGACGCATCTG
EST: G-AGAGTA-TAAG-CCCACAGA-GGCTACA-TCACTCGTT-GA-GAAAAG AC-AGTGCATC-TTGAAGTTCACTG-TTTGAACCCCAAAGGACGCATCTGGEST: gi|77578610|gb|DV218094.1|DV218094
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|45771374|gb|CN007226.1|CN007226
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: AGAGTACT-AGCCCCACAGAGGGCTACATTCACT-GTNGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|349832974|gb|FQ416352.1|FQ416352
genomic: AGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|110700143|gb|EE077843.1|EE077843
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: AA-AGTACTAAGCCCCA-AGAGGGCTAC-TTCACTCGTTGGGA-GAAAAG ACA-GTGCTTCTTTEST: gi|161709750|gb|FC058051.1|FC058051
genomic: AAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGG-ATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTT
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|110730321|gb|EE107269.1|EE107269
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGA-TACTAAGCCCCCCAGAGGGCTAC-TTC-CTCCTTGGATGAAAAG A-AAGTGCATCTTTGAEST: gi|30301339|gb|CB978133.1|CB978133
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGA
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|30298308|gb|CB975102.1|CB975102
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGGGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|45771291|gb|CN007143.1|CN007143
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GGCTACA-TCACTCG-TGGATGAAAAG ACAAG-GCATC-TTGAAGTTCACTG-TTTGAACCCCAAAGGACGCATCTGGEST: gi|77586266|gb|DV222232.1|DV222232
genomic: GGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|30298235|gb|CB975029.1|CB975029
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGGGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|161711977|gb|FC060844.1|FC060844
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTCGGATGAGAAG ACAAGTGCATCTGTGAAGTTCACTGTEST: gi|161712114|gb|FC061486.1|FC061486
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGT
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|156735475|gb|EV239596.1|EV239596
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|110723142|gb|EE100116.1|EE100116
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAAGT-CACTGTTTTGAACCCCAAAG-ACGCATCTGEST: gi|33404311|gb|CF209938.1|CF209938
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAA-GTTCACTGTTTTGAACCCCAAAGGACGCATCTG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|30253098|gb|CB970649.1|CB970649
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|110363975|gb|EC927611.1|EC927611
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|33409430|gb|CF215057.1|CF215057
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|77579387|gb|DV218527.1|DV218527
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|110420694|gb|EC986971.1|EC986971
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGA-TACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|110698064|gb|EE075650.1|EE075650
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|110710370|gb|EE086656.1|EE086656
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|37183558|gb|CF602912.1|CF602912
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|161712274|gb|FC061897.1|FC061897
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|71871483|gb|DT020538.1|DT020538
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGEST: gi|161713803|gb|FC063791.1|FC063791
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
EST: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTTGTTGGATGAAAAG ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
genomic: GAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcat ... actggtgcagACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGGCAATATTGAGTTTCCGCTGCCTTTTGGAAGAGTACTAAGCCCCACAGAGGGCTACATTCACTCGTTGGATGAAAAGgtaattgcatatctgttctactcatatttacgtttgacagtaaaatttcctgtcttgggtaattatcattcctatggtaggaattattagtgcaccaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaggaa