Sequence
atgc intronic sequence ATGC exonic sequenceGCATTGCAAGGAGCACTGCTCAGCTGCACCTATACTATGCTTGACTATGCACAAACTGGGCTAATTGCAGCAGTATTCTTCTTTAAAgtgagtgaggccttacatactaatgatgttaatactttatcaattgtcttaaaaaaaaaaaatgatcatgttgtattatgtacccaaacctgtatgtaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0036g01130.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G41050.1 (Glycine max), 5'ss of exon 6
GCATTGCAAGGAGCACTGCTCAGCTGCACCTATACTATGCTTGACTATGCACAAACTGGGCTAATTGCAGCAGTATTCTTCTTTAAAgtgagtgaggccttacatactaatgatgttaatactttatcaattgtcttaaaaaaaaaaaatgatcatgttgtattatgtacccaaacctgtatgtaat-----
|||||||||||||| |||||||||| | || ||| | ||||||||||||||||| || | ||||||||||| ||||| ||||||||||| | | || | ||| | | || ||| || |||| | | | | || || || || | |||||| | | | ||
ACATTGCAAGGAGCATTGCTCAGCTGTTCGTACACTGTACTTGACTATGCACAAACCGGATTGATTGCAGCAGTGTTCTTTTTTAAAgtgag--atggctaatcctttaaatacatatatgtttt-tcctttgt-tcactgagtactaacaat-atcctgaaagatgtactaatgatgttgtagcatggtag
upper sequence: Vv14s0036g01130.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G04460.1 (Arabidopsis thaliana), 5'ss of exon 7
GCATTGCAAGGAGCACTGCTCAGCTGCACCTATACTATGCTTGACTATGCACAAACTGGGCTAATTGCAGCAGTATTCTTCTTTAAAgtgagtgaggccttacatactaatg-atgttaatacttt--atcaattgtcttaaaaaaaa--aaaatgatcatgttgtattatgtacccaaacctgtatgtaat
| ||||||| ||||| || |||||| | ||| || ||||||||||||| ||||| || |||||||||||||| || |||| ||||| ||| | | | | | |||||| | || | | | |||||||||| | | | | ||| ||| | | || ||
ACGGTGCAAGGGGCACTTCTTAGCTGCTCATATGCTGTGCTTGACTATGCCCAAACCGGTCTAATTGCAGCAGTTTTTATCTTCAAAgtaagtatccataaatgtcccagtttatgttacttctcttatttcactgtcttaaaagcttccagcagaagtaggttcctttaggaaatgaaggtcctaa-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33408179|gb|CF213806.1|CF213806EST: TGCTTGACTATGCACAAACTGGGCTAATTGCAGCAGTATTCTTCTTTAAA ATGATGGAGTGGTGGTACCAATCTGCTGAGGA
genomic: TGCTTGACTATGCACAAACTGGGCTAATTGCAGCAGTATTCTTCTTTAAAgtgagtgagg ... aactactcagATGATGGAGTGGTGGTACCAATCTGCTGAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATTGCAAGGAGCACTGCTCAGCTGCACCTATACTATGCTTGACTATGCACAAACTGGGCTAATTGCAGCAGTATTCTTCTTTAAAgtgagtgaggccttacatactaatgatgttaatactttatcaattgtcttaaaaaaaaaaaatgatcatgttgtattatgtacccaaacctgtatgtaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa