Sequence
atgc intronic sequence ATGC exonic sequenceTGCGAATAATGCGTAGATTACGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAGgtacatttatatgatattttccccctccttttaatgaagtgaatttctttgccaaagtattggaatacttaatccgaatctttttgttcttggcatgcat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g06410.1 (Oryza sativa), 5'ss of exon 7
TGCGAATAATGCGTAGATTACGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAGgtacatttatatgatattttccccctccttttaatgaagtg-aatttctttgccaaagtat--tggaatacttaatc-cgaatctttttgttcttggcatgcat
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TGCGGATTATGCGTCGACTGCGTCATCCAAATATTGTTCTCTTCATGGGTGCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAGgtataacaattttctactgttgtttgcttgtgaagatcttttggtgtttatgataaagtatcatggtgtagataaacatagaaaacattctatctggaag----
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G044180_T01 (Zea mays), 5'ss of exon 7
TGCGAATAATGCGTAGATTACGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAGgtacatttatatgatattttccccctccttttaatgaagtgaatttctttgccaaagtattggaat--acttaatccgaatctttttgttcttggcatgcat
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TTCGAATTATGCGTCGGCTGCGCCATCCAAATATTGTTCTCTTTATGGGTGCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATATATTCCAAGgtataatagt-tacttttactacacaatcactgtttatatggaatgtgtgaattaaatatcccactctagacaacacagaaggtatagactcgtgcccgcg-
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G038982_T01 (Zea mays), 5'ss of exon 7
TGCGAATAATGCGTAGATTACGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAGgtacatt--tatatgatattttccccctccttttaatgaagtgaatttctttgccaaagtattggaatacttaatccgaatctttttgttcttggcatgcat
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TCCGAATTATGCGTCGGCTGCGCCATCCAAATATTGTTCTCTTTATGGGTGCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATACCTTCCAAGgtataatacttactcttactacacaattgttgtttatattgtggaatgtgtgaattaaatatcccagt-ctagacaacacagaaactgtagctggcatgca-
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G175563_T01 (Zea mays), 5'ss of exon 7
TGCGAATAATGCGTAGATTACGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAGgtacatttatatgatattttccccctc-cttttaatgaagtgaatttctttgccaaagtattggaat--acttaatccgaatctttttgttcttggcatgcat
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TTCGAATTATGCGTCGGCTGCGCCATCCAAATATTGTTCTCTTTATGGGTGCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATATCTTCCAAGgtataat-atactttaactacacaatcactgtttatattgtggaatgtgtgaattaaatatcccactctagacaatacagaaggtactgccat--gcataaac
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G37330.1 (Glycine max), 5'ss of exon 8
TGCGAATAATGCGTAGATTACGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAGgtacat---ttatatgatattttccccctc-----ctttt----aatgaagtgaatttct--ttgccaaa----gtattggaatacttaatccgaatct-ttttgttcttggcatgcat--------------------------------------
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TACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAAGgtatataactttttccctcttttcattattaaatatttttacaaaataatgataacttcttgttgcccaaattggtctttgcaaccttagctattttccatgttactcttttcatacttaggtgtctcaccagtgttactaatgtaccattttgcag
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 8
TGCGAATAATGCGTAGATTACGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAGgtacat------------ttatatgatattttccccctccttttaatgaagtgaatttctttgccaaagtattggaatacttaatccgaatcttttt-------gttcttggcatgcat--------------------------------------
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TGCGGATAATGCGTAGGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGgtatatagctttttcccttttttcattattatatttttttacaaaataatgagaaattcttgttggtcatattggtctttgcaaccttagctattttccatgttactcttttcatatttatgagtctcaccagtgttactaatgtaccattttgcag
upper sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G08720.1 (Arabidopsis thaliana), 5'ss of exon 7
TGCGAATAATGCGTAGATTACGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAGgtacatttatatgatattttccccctccttttaatgaagtgaatttctttgccaaagtattggaatacttaa---tccgaatctttttgttcttggcatgcat--
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TACGGATTATGCGAAGATTGCGTCATCCAAATGTTGTATTCTTCCTTGGGGCTGTTACTCGTCCTCCAAATCTTTCCATCGTCACAGAGTTTCTGCCTAGgtttgtcc------------catcttcttcttgtgaaagttaattgcata--tgagatttttgagtcctaaaagattctaatgtttttttgctgttttattatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30303225|gb|CB980019.1|CB980019EST: GCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAG AGGAAGCTTATATCGGATTCTTCATCGTCCTTCTTGTCAAATTGATGAGAA
genomic: GCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAGgtacatttat ... ggtttctcagAGGAAGCTTATATCGGATTCTTCATCGTCCTTCTTGTCAAATTGATGAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCGAATAATGCGTAGATTACGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAGgtacatttatatgatattttccccctccttttaatgaagtgaatttctttgccaaagtattggaatacttaatccgaatctttttgttcttggcatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaatac