Sequence
atgc intronic sequence ATGC exonic sequenceGAGCTGTTCCATGTACATTACAGACCATAGGTTTGTTCTTCATTCCAGAGTCTCCAAGATGGCTGgtgagtccaattaaaattttttgcaggttttgcatatggtgttatagaattgtataaacaaaaaatgtgatagtcccagaggaagattaagtagttgagtgaaattctctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g00250.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G05400.1 (Arabidopsis thaliana), 5'ss of exon 8
GAGCTGTTCCATGTACATTACAGACCATAGGTTTGTTCTTCATTCCAGAGTCTCCAAGATGGCTGgtgagtccaattaaaattttttgcaggttttgcatatggtgttataga-attgta-taaacaaaaaatgtgatagtcccagaggaagattaagtagttgagtgaaattctctgcag
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GTAGTATTCCATGTTGGATACAAGTTATTGGTTTGTTCTTCATACCTGAGTCTCCAAGATGGCTGgttagtcatataaatcaatcgtgaaaaacttatatccatgaacatgattgttgtaatttgtaagtaaatatataataatatatgaacat--aatatttacag--------------
upper sequence: Vv14s0030g00250.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G27350.1 (Arabidopsis thaliana), 5'ss of exon 8
GAGCTGTTCCATGTACATTACAGACCATAGGTTTGTTCTTCATTCCAGAGTCTCCAAGATGGCTGgtgagtccaattaaaattttttgcaggttttgcatatggtgttatagaattgtataaacaaaaaatgtgatagtcccagaggaagattaagtagttgagtgaaattctctgcag
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GTGCTTTACCATGCTTCATTCAAGTAATCGGTTTATTCTTCGTGCCAGAGTCTCCAAGATGGCTGgttggtc-atttaatttttctttagtgttttacgtaatttatta-attattat-caaccatgagaagaaaaaaatttaaaccaaactattttcattt--tgaag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110698937|gb|EE077003.1|EE077003EST: CATTACAGACCATAGGTTTGTTCTTCATTCCAGAGTCTCCAAGATGGCTG GCAAAGGTTGGTC-GAGAGAAAGAGTTAGAAGCTGCTCTGCAGAGGCTAAG
genomic: CATTACAGACCATAGGTTTGTTCTTCATTCCAGAGTCTCCAAGATGGCTGgtgagtccaa ... ttctctgcagGCAAAGGTTGG-CAGAGAGAAAGAGTTAGAAGCTGCTCTGCAGAGGCTAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCTGTTCCATGTACATTACAGACCATAGGTTTGTTCTTCATTCCAGAGTCTCCAAGATGGCTGgtgagtccaattaaaattttttgcaggttttgcatatggtgttatagaattgtataaacaaaaaatgtgatagtcccagaggaagattaagtagttgagtgaaattctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG