1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTTATTTGTATTGGGATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCAGAAACCCTCTATGgtattcttcttgtcatatttcatttgctatatctatatgcaggaagaaagcttttggtagcttagcgagagataagtcaactaaataaactcaaaagcac...
species | Vitis vinifera |
transcript | Vv14s0006g02720.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCAGAAACCCTCTATG GTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTTEST: gi|110370956|gb|EC934605.1|EC934605
genomic: ATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCAGAAACCCTCTATGgtattcttct ... ttttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTT
EST: ATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCAGAAACCCTCTATG GTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTT
genomic: ATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCAGAAACCCTCTATGgtattcttct ... ttttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTTATTTGTATTGGGATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCAGAAACCCTCTATGgtattcttcttgtcatatttcatttgctatatctatatgcaggaagaaagcttttggtagcttagcgagagataagtcaactaaataaactcaaaagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagca