1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTGTTCCAGTTGCTTCAATGTTGACTCCTAATCAGTTTGAAGCAGAACTACTAACTGGGTTCAGgtattttgtggtactatatgataatattcttgaatctgaccttgttcacttcatgttctctatactttcggatatctccttgctgcactaaattctttat...
species | Vitis vinifera |
transcript | Vv14s0006g01660.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCAATGTTGACTCCTAATCAGTTTGAGGCAGAACTACTAACCGGGTTCAG GATTGTGGCTGAAAAAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTCEST: gi|110715098|gb|EE092763.1|EE092763
genomic: TCAATGTTGACTCCTAATCAGTTTGAAGCAGAACTACTAACTGGGTTCAGgtattttgtg ... cttactgcagGATTGTGACTGAAAAAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTC
EST: TCAATGTTGACTCCTAATCAGTTTGAAGCAGAACTACTAACTGGGTTCAG GATTGTGACTGAAAAAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTCEST: gi|18458843|gb|BM437121.1|BM437121
genomic: TCAATGTTGACTCCTAATCAGTTTGAAGCAGAACTACTAACTGGGTTCAGgtattttgtg ... cttactgcagGATTGTGACTGAAAAAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTC
EST: TCAATGTTGACTCCTAATCAGTTTGAGGCAGAACTAGTAACCGGGTTCAG GATTGTGGCTGAAAAAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTCEST: gi|161712131|gb|FC061503.1|FC061503
genomic: TCAATGTTGACTCCTAATCAGTTTGAAGCAGAACTACTAACTGGGTTCAGgtattttgtg ... cttactgcagGATTGTGACTGAAAAAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTC
EST: TCAATGTTGACTCCTAATCAGTTTGAGGCAGAACTACTAACCGGGTTCAG GATTGTGGCTGAAAAAGATGG
genomic: TCAATGTTGACTCCTAATCAGTTTGAAGCAGAACTACTAACTGGGTTCAGgtattttgtg ... cttactgcagGATTGTGACTGAAAAAGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTCCAGTTGCTTCAATGTTGACTCCTAATCAGTTTGAAGCAGAACTACTAACTGGGTTCAGgtattttgtggtactatatgataatattcttgaatctgaccttgttcacttcatgttctctatactttcggatatctccttgctgcactaaattctttat
- - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - TGAAGC