1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGTGGTTTCGTGTTAATGAGCAATTGCCTGCTGCATTACAGAAGTCATTACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAGgttaggccatttgcattttcaaagcttttaggtgttggtatgtccagtataatttatttttcaaaagaaggtcttaagatttagttaaattgattgatct...
species | Vitis vinifera |
transcript | Vv13s0156g00640.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAG TEST: gi|29786212|gb|CB343818.2|CB343818
genomic: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAGgttaggccat ... atattagtag-
EST: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAG TEST: gi|29786212|gb|CB343818.2|CB343818
genomic: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAGgttaggccat ... atattagtag-
EST: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAG TEST: gi|110730727|gb|EE108139.1|EE108139
genomic: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAGgttaggccat ... atattagtag-
EST: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAG TEST: gi|110730727|gb|EE108139.1|EE108139
genomic: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAGgttaggccat ... atattagtag-
EST: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAG TEST: gi|110730727|gb|EE108139.1|EE108139
genomic: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAGgttaggccat ... atattagtag-
EST: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAG T
genomic: ACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAGgttaggccat ... atattagtag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGGTTTCGTGTTAATGAGCAATTGCCTGCTGCATTACAGAAGTCATTACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAGgttaggccatttgcattttcaaagcttttaggtgttggtatgtccagtataatttatttttcaaaagaaggtcttaagatttagttaaattgattgatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga