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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTTTTGCCCGTCTGACTTGCGCTGACAGTAATCAGTTCCATGCTGTCTGCCTGGATACAAGCCCTCCCATATTCTACATGAATGATACATCCCATAGgcaagttcattttttcatcttttcaaatttctaattttaagcactttaacatttttttaattagctttttcattttgagttgtaccattaaatttatggacaatatttttatggttcag

Basic information

species Vitis vinifera
transcript Vv13s0106g00790.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110691343|gb|EE069333.1|EE069333
EST:     TGCCTGGATACAAGCCCTCCCATATTCTACATGAATGATACATCCCATAG                         GATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAG
genomic: TGCCTGGATACAAGCCCTCCCATATTCTACATGAATGATACATCCCATAGgcaagttcat ... tatggttcagGATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAG
EST: gi|110698656|gb|EE076402.1|EE076402
EST:     TGCCTGGATACAAGCCCTCCCATATTCTACATGAATGATACATCCCATAG                         GATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAG
genomic: TGCCTGGATACAAGCCCTCCCATATTCTACATGAATGATACATCCCATAGgcaagttcat ... tatggttcagGATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAG
EST: gi|110698365|gb|EE075791.1|EE075791
EST:     TGCCTGGATACAAGCCCTCCCATATTCTACATGAATGATACATCCCATAG                         GATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAG
genomic: TGCCTGGATACAAGCCCTCCCATATTCTACATGAATGATACATCCCATAGgcaagttcat ... tatggttcagGATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAG