Sequence
atgc intronic sequence ATGC exonic sequenceATGATAAGGCTTGTACATTTGTGGGAACTGCTGCTTATGTCCCTCCAGAAGTTCTCAATTCTTCTCCTGCAACGTTTGGgtaagtcatttcttctgaaagatttgggcataaattttagatctcaaattgccttttaaaaagaaaatcttaaattactgccagtttttgtggattcatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 6
ATGATAAGGCTTGTACATTTGTGGGAACTGCTGCTTATGTCCCTCCAGAAGTTCTCAATTCTTCTCCTGCAACGTTTGGgtaagtcatttcttctgaaagatttgggcataaattttagatctcaaattgccttttaaaaagaaaatcttaaattactgccagtttttgtggat--tcatt
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ATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGgtagggactaaattatccacgtaatacagatgagttct-gttacgataatattatttcttatggctccatcatgatgcagctctcttttgaatatagtcat-
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 6
ATGATAAGGCTTGTACATTTGTGGGAACTGCTGCTTATGTCCCTCCAGAAGTTCTCAATTCTTCTCCTGCAACGTTTGGgtaagtcatttcttctgaaagatttgggcataaattttag-atctcaa-attgccttttaaaaagaaaatcttaaattactgccagtttttgtggattcatt
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ATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGgtagggactaaattaccaatgtaatacagatgaattctgttatgataatattattttttatggccccatcatgatgttagctctcttttgaatatagtca--
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 6
ATGATAAGGCTTGTACATTTGTGGGAACTGCTGCTTATGTCCCTCCAGAAGTTCTCAATTCTTCTCCTGCAACGTTTGGgtaagtcatttct-tctgaaagatttgggcataaattttagatctcaaattgccttttaaaaagaaaatcttaaattactgccagtttttgtggattcatt--
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ACGATAAGGCGTGCACTTTTGTCGGGACTGCTGCATATGTTCCTCCAGAAGTTCTCAACTCCTCTCCCGCAACTTTCGGgtaagagttttctgtttctgtaatttgcgttttggttttgtggattgcgatgcctctcttactttgtac----aatttctttggtactctgtggaa-caccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717324|gb|FC068850.1|FC068850EST: GCTGCTTATGTCCCTCCAGAAGTTCTCAATTCTTCTCCTGCAACGTTTGG AAACGATCTTTGGGCACTTGGCTGCACTTTGTACCAGATGCTTTCTGGAAC
genomic: GCTGCTTATGTCCCTCCAGAAGTTCTCAATTCTTCTCCTGCAACGTTTGGgtaagtcatt ... atacatacagAAACGATCTTTGGGCACTTGGCTGCACTTTGTACCAGATGCTTTCTGGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGATAAGGCTTGTACATTTGTGGGAACTGCTGCTTATGTCCCTCCAGAAGTTCTCAATTCTTCTCCTGCAACGTTTGGgtaagtcatttcttctgaaagatttgggcataaattttagatctcaaattgccttttaaaaagaaaatcttaaattactgccagtttttgtggattcatt
- - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa