1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACAACAAGCAACACTATAAGTTCTTGGGGAGAGGCATAGATATGATATCACTCATCAAGCTGCATGTTGAGGGAGGCAAAGTCGTTCGCCATGAAGACTGgtaagcatcagtctgtgttatttaattctgaaacaaagtatacattacttctattgacttgctctttaaaaggaaacaaaagagggggagggggaggggg...
species | Vitis vinifera |
transcript | Vv13s0073g00160.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTATCAAGCTGCATGTTGAGGGAGGCAAAGTCGTTCGCCATGAAGACTG GTGGGACAAAAAGCCCCTGTTGAACAGAGAGACAGTTAAGCTGCCATTGGTEST: gi|110361329|gb|EC924795.1|EC924795
genomic: CTCATCAAGCTGCATGTTGAGGGAGGCAAAGTCGTTCGCCATGAAGACTGgtaagcatca ... atgtgttcagGTGGGACAAAAAGCCCCTGTTGAACAGAGAGACAGCTAAGCTGCCATTGGT
EST: CTTATCAAGCTGCATGTTGAGGGAGGCAAAGTCGTTCGCCATGAAGACTG GTGGGACAAAAAGCCCCTGTTGAACAGAGAGACAGCTAAGCTGCCATTGGTEST: gi|34416267|gb|CF415021.1|CF415021
genomic: CTCATCAAGCTGCATGTTGAGGGAGGCAAAGTCGTTCGCCATGAAGACTGgtaagcatca ... atgtgttcagGTGGGACAAAAAGCCCCTGTTGAACAGAGAGACAGCTAAGCTGCCATTGGT
EST: CTCATCAAGCTGCATGTTGAGGGAGGCAAAGTCGTTCGCCATGAAGACTG GTGGGACAAAAAGCCCCTGTTGAACAGAGAGACAGCTAAGCTGCCATTGGTEST: gi|71869824|gb|DT018879.1|DT018879
genomic: CTCATCAAGCTGCATGTTGAGGGAGGCAAAGTCGTTCGCCATGAAGACTGgtaagcatca ... atgtgttcagGTGGGACAAAAAGCCCCTGTTGAACAGAGAGACAGCTAAGCTGCCATTGGT
EST: CTCATCAAGCTGCATGTTGAGGGAGGCAAAGTCGTTCGCCATGAAGACTG GTGGGACAAAAAGCCCCTGTTGAACAGAGAGACAGCTAAGCTGCCATTGGT
genomic: CTCATCAAGCTGCATGTTGAGGGAGGCAAAGTCGTTCGCCATGAAGACTGgtaagcatca ... atgtgttcagGTGGGACAAAAAGCCCCTGTTGAACAGAGAGACAGCTAAGCTGCCATTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAACAAGCAACACTATAAGTTCTTGGGGAGAGGCATAGATATGATATCACTCATCAAGCTGCATGTTGAGGGAGGCAAAGTCGTTCGCCATGAAGACTGgtaagcatcagtctgtgttatttaattctgaaacaaagtatacattacttctattgacttgctctttaaaaggaaacaaaagagggggagggggaggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggag