1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTGgtgggttctcttacatcttgtaaggattttcattggtttttcatttcttttgaaatggtaaccttctcagctttagttagctactcatggttgtgggaag...
species | Vitis vinifera |
transcript | Vv13s0067g02210.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAATGGATCCAACTTTTTCAGGAACACGTGGATATAAATTACTTGTG GATTTGGCTGCTGCAGTTGATGAAGAAGAATGT-GTGAAGTTCACTGATGCEST: gi|32272370|gb|CD721529.1|CD721529
genomic: GAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTGgtgggttctc ... tgaatggcagGATTTGGCTGCTGCAGTTGATGAGGAAGA-TGTTGTGAAGTTCACTGATGC
EST: GAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTG GATTTGGCTGCTGCAGTTGATGAGGAAGATGTTGTGAAGTTCACTGATGCTEST: gi|351012547|gb|FQ430111.1|FQ430111
genomic: GAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTGgtgggttctc ... tgaatggcagGATTTGGCTGCTGCAGTTGATGAGGAAGATGTTGTGAAGTTCACTGATGCT
EST: GAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTG GATTTGGCTGCTGCAGTTGATGAGGAAGATGTTGTGAAGTTCACTGATGCTEST: gi|30327709|gb|CD010971.1|CD010971
genomic: GAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTGgtgggttctc ... tgaatggcagGATTTGGCTGCTGCAGTTGATGAGGAAGATGTTGTGAAGTTCACTGATGCT
EST: GAAATGGATCCAACTTTTTCAGGAACACGTGAAATATAA-TTACTTGTG GATTTGGCTGCTGCAGTTGATGAGGAAGATGTTGTGAAGTTCACTGATGCT
genomic: GAAATGGATCCAACTTTTTCAGGAACACGTGAA-TATAAATTACTTGTGgtgggttctc ... tgaatggcagGATTTGGCTGCTGCAGTTGATGAGGAAGATGTTGTGAAGTTCACTGATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATGGATCCAACTTTTTCAGGAACACGTGAATATAAATTACTTGTGgtgggttctcttacatcttgtaaggattttcattggtttttcatttcttttgaaatggtaaccttctcagctttagttagctactcatggttgtgggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggaa