1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGAACATTGTCTAGCGGAGTTGAAATAGCTGTGACATCTGCTGCAGTGACATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAGgtacttgagagattacatccactaaactttgtggttttgattcatcttggtagtccttacattttctttggttgtggtttcag
species | Vitis vinifera |
transcript | Vv13s0067g01550.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAG ATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGAEST: gi|110729240|gb|EE105353.1|EE105353
genomic: CATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAGgtacttgaga ... gtggtttcagATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGA
EST: CATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAAGAAGAAG ATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGAEST: gi|110717568|gb|EE093538.1|EE093538
genomic: CATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAGgtacttgaga ... gtggtttcagATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGA
EST: CATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAG ATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGAEST: gi|294964771|gb|GW838574.1|GW838574
genomic: CATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAGgtacttgaga ... gtggtttcagATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGA
EST: CATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAG ATCGAAAGGATATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGAEST: gi|26262281|gb|CA813344.1|CA813344
genomic: CATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAGgtacttgaga ... gtggtttcagATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGA
EST: CATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAG ATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGA
genomic: CATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAGgtacttgaga ... gtggtttcagATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAACATTGTCTAGCGGAGTTGAAATAGCTGTGACATCTGCTGCAGTGACATCTTCCAAGGATTGGTCAAAAAATCTAGAAGTGCAGTTCAGGAAGAAGgtacttgagagattacatccactaaactttgtggttttgattcatcttggtagtccttacattttctttggttgtggtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG