Sequence
atgc intronic sequence ATGC exonic sequenceCCGTGACTATGGAGTTATCAATAACATCCACCATGATATTGGGACTCATGTTATACATCATCTCTTCCCACAAATCCCACACTATCACCTCGTAGAAGCAgtgagtatcccttctacaatcagcttaacagcaattattcttaaccacccactgtatctgatctagttctatgcttggaaatttaatcttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g18070.1 (Oryza sativa), 5'ss of exon 7
CCGTGACTATGGAGTTATCAATAACATCCACCATGATATTGGGACTCATGTTATACATCATCTCTTCCCACAAATCCCACACTATCACCTCGTAGAAGCAgtgagtatcccttctacaatcagcttaacagcaattattcttaaccacccactgtatctgatctagttctatgcttggaaatttaatcttgtag
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TCGGGACTACGGGTGGATCAACAACGTACACCATGACATTGGAACCCATGTCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagccatccgccactcttgctgttttaatgaattattttgcaagaatcgcct---actaagttatgttggtttggacctaa-cttgcag
upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G129209_T01 (Zea mays), 5'ss of exon 4
CCGTGACTATGGAGTTATCAATAACATCCACCATGATATTGGGACTCATGTTATACATCATCTCTTCCCACAAATCCCACACTATCACCTCGTAGAAGCAgtgagtatcccttctacaatcagcttaaca-gcaattattcttaaccacccactgtatctgatctagttctatgcttggaaatttaatcttgtag
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CCGGGACTACGGGTGGATCAACAACATCCACCATGACATTGGGACTCATGTCATCCACCATCTCTTCCCGCAGATCCCACACTACCATCTCATAGAGGCAgtaagtaacaa--ctaaatctcattcactacgctaatgcacatatcagatcactgaaa--gatggagg-ctgtgcatgcag--------------
upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G074401_T01 (Zea mays), 5'ss of exon 7
CCGTGACTATGGAGTTATCAATAACATCCACCATGATATTGGGACTCATGTTATACATCATCTCTTCCCACAAATCCCACACTATCACCTCGTAGAAGCAgtgagtatcccttctacaatcagcttaacagcaattattcttaaccacccactgtatct-gatctagttctatgcttggaaatttaatcttgtag
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CCGGGACTATGGACTGATTAACAATATCCACCATGACATCGGAACTCATGTCATCCATCACCTTTTCCCTCAAATCCCACATTACCATCTCATTGAGGCGgtaagagtttcccctattcttgccttttttttc-ttcttttttataagtttctttgcctagatcataagacctgtttttgaat---gacctgcag
upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G11170.1 (Arabidopsis thaliana), 5'ss of exon 7
CCGTGACTATGGAGTTATCAATAACATCCACCATGATATTGGGACTCATGTTATACATCATCTCTTCCCACAAATCCCACACTATCACCTCGTAGAAGCAgtgagtatcccttctacaatcagcttaacagcaattattcttaaccacccactgtatctga-tctagttctatgcttggaaatttaatcttgtag
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TCGTGACTACGGATTGATCAATAACATCCATCATGATATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAgtaagtaaattgaaagtaa--agactgtttgtgtttttggtgttcatgctagtttccctgactcttgctccactgttatgcag------------
upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G05580.2 (Arabidopsis thaliana), 5'ss of exon 7
CCGTGACTATGGAGTTATCAATAACATCCACCATGATATTGGGACTCATGTTATACATCATCTCTTCCCACAAATCCCACACTATCACCTCGTAGAAGCAgtgagtatcccttctacaatcagcttaacagcaat-tattcttaaccacccactgtatc-tgatctag---ttctatgcttggaaatttaatcttgtag------------
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TCGTGACTACGGATGGATCAATAACATCCACCACGATATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAgtaagagttcttgatgatcttaagtaaagactattctggtgtggacttacttcaatatggtgtgctaaaccttccatatctatcttttcattttcctctttttctagacag
upper sequence: Vv13s0067g01120.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G05580.1 (Arabidopsis thaliana), 5'ss of exon 7
CCGTGACTATGGAGTTATCAATAACATCCACCATGATATTGGGACTCATGTTATACATCATCTCTTCCCACAAATCCCACACTATCACCTCGTAGAAGCAgtgagtatcccttctacaatcagcttaacagcaat-tattcttaaccacccactgtatc-tgatctag---ttctatgcttggaaatttaatcttgtag--------
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TCGTGACTACGGATGGATCAATAACATCCACCACGATATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAgtaagagttcttgatgatcttaagtaaagactattctggtgtggacttacttcaatatggtgtgctaaaccttccatatctatcttttcattttcctctttttctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110375227|gb|EC940191.1|EC940191EST: TTATACATCATCTCTTCCCACAAATCCCACACTATCACCTCGTAGAAGCA ACTAAAGCAGCTAAGCCAGTTCTTGGGAAGTACTACCGGGAGCCAAAGAAA
genomic: TTATACATCATCTCTTCCCACAAATCCCACACTATCACCTCGTAGAAGCAgtgagtatcc ... aatcttgtagACTAAAGCAGCTAAGCCAGTTCTTGGGAAGTACTACCGGGAGCCAAAGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGTGACTATGGAGTTATCAATAACATCCACCATGATATTGGGACTCATGTTATACATCATCTCTTCCCACAAATCCCACACTATCACCTCGTAGAAGCAgtgagtatcccttctacaatcagcttaacagcaattattcttaaccacccactgtatctgatctagttctatgcttggaaatttaatcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC