1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGACATGGCTTTGGCTGTGAAGAATCCATGCCACCTTAACATGGCAGCATGCCTGATAAAGCTGAAGCGCTACGAAGAAGCCATTGGTCAATGCAGCATTgtatgtataatctttgtggacaaatcatgtcttctattttatatgcttttgattgttcttatcatctctggaaactacagtgtggaagaagaaaatcctt...
species | Vitis vinifera |
transcript | Vv13s0064g00580.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATAAAGCTGAAGCGCTACGAAGAAGCCATTGGTCAATGCAGCATT GTATTGGCAGAGGATGAAAACAATGTCAAGGCATTATTTAGACGAGGAAAAEST: gi|110732252|gb|EE107386.1|EE107386
genomic: ATAAAGCTGAAGCGCTACGAAGAAGCCATTGGTCAATGCAGCATTgtatgtataa ... ggggtcttagGTATTGGCAGAGGATGAAAACAATGTCAAGGCATTATTTAGACGAGGAAAA
EST: AAGCGCTACGAAGAAGCCATTGGTCAATGCAGCATT GTATTGGCAGAGGATGAAAACAATGTCAAGGCATTATTTAGACGAGGAAAAEST: gi|110385321|gb|EC949833.1|EC949833
genomic: AAGCGCTACGAAGAAGCCATTGGTCAATGCAGCATTgtatgtataa ... ggggtcttagGTATTGGCAGAGGATGAAAACAATGTCAAGGCATTATTTAGACGAGGAAAA
EST: ATCAGGACGATGAAAATGAAATAGTTACTGAAAATGCAGCATTTGTGCATGGGGAACCTCTTCAAGATGGTACGGGTCCTCCAAAAGTTGATTCTGAAGTGGAAGTTCTTCATGAGAAAEST: gi|30304226|gb|CB981020.1|CB981020
genomic: ATCAGGACGATGAAAATGAAATAGTTACTGAAAATGCAGCATTTGTGCATGGGGAACCTCTTCAAGATGGTACGGGTCCTCCAAAAGTTGATTCTGAAGTGGAAGTTCTTCATGAGAAA
EST: ATCAGGACGATGAAAATGAAATAGTTACTGAAAATGCAGCATTTGTGCATGGGGAACCTCTTCAAGATGGTACGGGTCCTCCAAAAGTTGATTCTGAAGTGGAAGTTCTTCATGAGAAA
genomic: ATCAGGACGATGAAAATGAAATAGTTACTGAAAATGCAGCATTTGTGCATGGGGAACCTCTTCAAGATGGTACGGGTCCTCCAAAAGTTGATTCTGAAGTGGAAGTTCTTCATGAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACATGGCTTTGGCTGTGAAGAATCCATGCCACCTTAACATGGCAGCATGCCTGATAAAGCTGAAGCGCTACGAAGAAGCCATTGGTCAATGCAGCATTgtatgtataatctttgtggacaaatcatgtcttctattttatatgcttttgattgttcttatcatctctggaaactacagtgtggaagaagaaaatcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa