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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACATCAAAGGACTATTGATAAATTTCATTCATTCATTCTGGCCTTCACTGCTAAAAATTCCATCTTTCTTAGTTGAGTTCATAACACCTATTGTGAAGgtcagtatcttttagtttggtcagtatcaggttcagttttatcttgaatgggtcttcttttagaaggaaccatatgtcattaatatgtatataatgtacag

Basic information

species Vitis vinifera
transcript Vv13s0064g00560.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g47150.1 (Oryza sativa), 5'ss of exon 7
TCACATCAAAGGACTATTGATAAATTTCATTCATTCATTCTGGCCTTCACTGCTAAAAATTCCATCTTTCTTAGTTGAGTTCATAACACCTATTGTGAAGgtcagtatcttttagt--ttggtcagtatcaggttcagttt----------------------tatcttgaatgggtcttcttttagaaggaaccata------tgtcattaatatgtatataatgtacag-----------------------------------------
 ||||||||||| || ||||| || |||||||| || ||||||||||| ||  | |||||||| |||||||| |||||||| || || |||||| | |||||  | | ||  |||   |||||   | ||| | | | |||                      |||| |   |     |    || ||||||  ||||      |||   | | || ||| ||| | |                                            
CCACATCAAAGGCCTGTTGATCAACTTCATTCACTCCTTCTGGCCTTCTCTTATTAAAATTCCTTCTTTCTTGGTTGAGTTTATTACTCCTATTATCAAGgtaggcagctcctaggggttggtatatttcatgcttattttctgtgtttacagcttgtcaaagtatcgtacttaaaattgtcatttgaaggagtcatatccttctgtgggttacatatatttaaagcatgcttggttggacggaataataattcttgaacatatttgcacag

upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G11610.1 (Glycine max), 5'ss of exon 7
TCACATCAAAGGACTATTGATAAATTTCATTCATTCATTCTGGCCTTCACTGCTAAAAATTCCATCTTTCTTAGTTGAGTTCATAACACCTATTGTGAAGgtcagtatcttttagtttggtcagtatcaggttcagttttatcttgaatgggtcttcttttagaaggaaccatatgtcattaatatgtatataatgtacag
 ||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||  | ||||| || |  || |||||  | | ||| ||||   ||| |||  || |  |||| ||| |  |  | ||| |   ||| ||| | |        || | | ||   |                   
CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCTATAATAAGGgttagtagagttttgtt--gttatcatcatgttta--tagaacttcat--ggttttcatattttgaattccctgtttctgcag------------------

upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G43170.1 (Glycine max), 5'ss of exon 7
TCACATCAAAGGACTATTGATAAATTTCATTCATTCATTCTGGCCTTCACTGCTAAAAATTCCATCTTTCTTAGTTGAGTTCATAACACCTATTGTGAAGgtcagtatcttttagtttggtcagtatcaggttcagttttatcttgaatgggtcttcttttagaaggaaccatatgtcattaatatgtatataatgtacag
 ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||| ||||||||||  | ||||| || |  || || ||  | | ||| |||||  ||| |||   |||  |||  ||| |  |  | |||||   ||| ||| | |        || | | ||   |                   
CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCCATAATAAGGgtaagtatggttttgtt--atcatcatcctgttta--tagaacttga---ggttttcatattttgaattccctgtctctgcag------------------