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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGAGGGAACTGTTATTGAAGGTGTTCATTGCACTCCAGATTCTGTGGAGCTACTACCACCACAGCCAAATATATCGAAACCTAGACTTCGTGTTGTGgtactatttttatctgttcaagatctgtaatattatatgtagtaactgcatttatacaacattccttgtcatatattggattgactatatgctttctgaa...

Basic information

species Vitis vinifera
transcript Vv13s0019g04740.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543504|gb|CF511736.1|CF511736
EST:     AGCTACTACCACCACAGCCAAATATATCGAAACCTAGACTTCGTGTTGTG                         GTTCATGAAGGGAGAAATCATGAAGTTCGGGAGCTTGTGAAAAGTGCTGGA
genomic: AGCTACTACCACCACAGCCAAATATATCGAAACCTAGACTTCGTGTTGTGgtactatttt ... attcgtgcagGTTCATGAAGGGAGAAATCATGAAGTTCGGGAGCTTGTGAAAAGTGCTGGA
EST: gi|30256420|gb|CB972263.1|CB972263
EST:     AGCTACTACCACCACAGCCAAATATATCGAAACCTAGACTTCGTGTTATG                         GTTCATGAAGGGAGAAATCATGAAGTTCGGGAACTTGTGAAAAGTGCTGGA
genomic: AGCTACTACCACCACAGCCAAATATATCGAAACCTAGACTTCGTGTTGTGgtactatttt ... attcgtgcagGTTCATGAAGGGAGAAATCATGAAGTTCGGGAGCTTGTGAAAAGTGCTGGA
EST: gi|110701324|gb|EE078768.1|EE078768
EST:     AGCTACTACCACCACAGCCAAATATATCGAAACCTANACTTCGTGTTGTG                         GTTCATGAAGGGAGAAATCATGAAGTTCGGGAAACTTGTGAAA-GTGCTGG
genomic: AGCTACTACCACCACAGCCAAATATATCGAAACCTAGACTTCGTGTTGTGgtactatttt ... attcgtgcagGTTCATGAAGGGAGAAATCATGAAGTTCGGGAG-CTTGTGAAAAGTGCTGG
EST: gi|161715781|gb|FC065148.1|FC065148
EST:     AGCTACTAC-ACCACAGCCAA-TATATCGAAAC-TAGACTTC-TGT-GTG                         GT-CATGAAGG-AGAA-TCATGA-GTTCGG-AGCT-GTGAA
genomic: AGCTACTACCACCACAGCCAAATATATCGAAACCTAGACTTCGTGTTGTGgtactatttt ... attcgtgcagGTTCATGAAGGGAGAAATCATGAAGTTCGGGAGCTTGTGAA