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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTGATACCAAATGTGAGGGCCAAAGGCAAAGCATCAGTTCGTGTTGCTGATATTCTCAATCGCATGCAAGCAGAAGAGCCAGTCAACACATCCGATgtaattttgcattagtttaagcctattttaaagaaaattgaccttggaaatctcatgctttatttgataacacactttgtagcatccattaatagattgttttttgtgataaaacaaattaataaattgtttttttacttcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04720.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G35210.1 (Glycine max), 5'ss of exon 7
TGGACTGATACCAAATGTGAGGGCCAAAGGCAAAGCATCAGTTCGTGTTGCTGATATTCTCAATCGCATGCAAGCAGAAGAGCCAGTCAACACATCCGATgtaattttgcattagtttaagcctattttaaagaaaattgaccttg-gaaatctcatgctttatttgataacacactttgtagcatccattaatagattgttttttgtgataaaacaaattaataaattgtttttttacttcag
|||| ||||||||||||||||||| ||||| |||||||| || |||||||| || || || || || |||||||| || || ||||| ||| |||| ||||||||  |||  || | |     | | || |||  ||||  | | |   ||   ||  |   |   | ||    | |   | | ||  |||  || | ||     | | |       | |  ||    | ||| |||  | |||
TGGAGTGATACCAAATGTGAGGGCAAAAGGAAAAGCATCTGTGCGTGTTGCAGACATCCTAAACCGAATGCAAGCTGAGGAACCAGTTAACTCATCTGATgtaatcatgctctactattt-tttctcttcaagctaattagcttagcagaagaacaaacaaaa---gctatgttattaaatcgtatttatt--taaaatgcaccatataaccctctgatt--atcttctctttgtttg-tacag

upper sequence: Vv13s0019g04720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G54860.2 (Arabidopsis thaliana), 5'ss of exon 7
TGGACTGATACCAAATGTGAGGGCCAAAGGCAAAGCATCAGTTCGTGTTGCTGATATTCTCAATCGCATGCAAGCAGAAGAGCCAGTCAACACATCCGATgtaat---tttgcattagtttaagcctattttaaagaaaattgaccttggaaatctcatgctttatttgataacacactttgtagcatccattaatagattgttttttgtgataaaacaaattaataaattgtttttttacttcag
|||| | ||| ||||  ||||||| || ||||||||||||||||||||||| || ||||| || ||||||||||  || || || |||||  |    |||||||      |||| |||||| |   | |  |||  |  | | |  | |         |   || |||    |  |  |||  |  || | | |||    | | || | |   |                                
TGGAGTTATATCAAAAATGAGGGCAAAGGGCAAAGCATCAGTTCGTGTTGCAGACATTCTAAACCGCATGCAAGTGGAGGAACCTGTCAATTCGAATGATgtaaaatacctgcaatagtttgaa--tgtcataatcaccagttatttcgc--------tatcttgtttttgtatccttttttcactattc-taaatgatgtttgttctatttcag-------------------------------