Sequence
atgc intronic sequence ATGC exonic sequenceTTTCACTTAGGTTCACACCATCTATTCGCATTGATGACCGCCCTGGCTGTTCTTCCTACTGTCTGGCTCCGAGATCTCAGTGTTCTTAGTTACATCTCTGgtaagtattggatcgtgtagatgtagacgtagctatgtcttatggattttgaatatttttttttatgaagcttggtatatacatagtcacattatacgtaaattgcaagtgtatatggactgaattatcatatccgaggcttgatttctttggtaattcttagtttgggcttctttctttttttctttttcttttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04660.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G32260.1 (Glycine max), 5'ss of exon 6
TTTCACTTAGGTTCACACCATCTATTCGCATTGATGACCGCCCTGGCTGTTCTTCCTACTGTCTGGCTCCGAGATCTCAGTGTTCTTAGTTACATCTCTGgtaagtattggatcgtgtagatgtagacgtagctatgtcttatggattttgaatatttttttttatgaagcttggtatatacatagtcacattatacgtaaattgcaagtgtatatggactgaattatcatatccgaggcttgatttctttggtaattcttagtttgggcttctttctttttttctttttcttttttcag
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ATTGAACTGAATTCACATACATTGTTTGCTGTGATTACTACCTTGGCTGTTCTTCCTACTGTTTGGCTCCGTGACCTAAGTATTCTAAGTTACATATCTGgtaagagcttatttttg---gtgcaaataaggttttatcatac---ttcatggtgtccttttctgtag----tgggataagctttgttg--ttgt-tgttaaaggaaattata---------------------------------------------------------------------------------------
upper sequence: Vv13s0019g04660.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G35280.2 (Glycine max), 5'ss of exon 5
TTTCACTTAGGTTCACACCATCTATTCGCATTGATGACCGCCCTGGCTGTTCTTCCTACTGTCTGGCTCCGAGATCTCAGTGTTCTTAGTTACATCTCTGgtaagtattggatcgtgtagatgtagacgtagctatgtcttatggattttgaatatttttttttatgaagcttggtatatacatagtcacattatacgtaaattgcaagtgtatatggactgaattatcatatccgaggcttgatttctttggtaattcttagtttgggcttctttctttttttctttttcttttttcag
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ATTGAACTGAATTCACGTACTTTGTTTGCTGTGATTACTACCTTGGCTGTTCTTCCTACTGTTTGGCTCCGTGACCTAAGCATTCTCAGTTACATATCCGgtaagagcttatttttg-----gtgcaggtagtgatcagttatccatt---aaagcttggtcccatttgcctttggccttaag--gtcatattgc---tgaaataaggtttta---------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30325272|gb|CD008534.1|CD008534EST: GTTACATCTCTG CTGGGGGAGTTGTTGCTTCGATAGGGGTGGTCCTCTGCTTGTTTTGGGTTG
genomic: GTTACATCTCTGgtaagtattg ... cttttttcagCTGGGGGAGTTGTTGCTTCGATATTGGTGGTCCTCTGCTTGTTTTGGGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCACTTAGGTTCACACCATCTATTCGCATTGATGACCGCCCTGGCTGTTCTTCCTACTGTCTGGCTCCGAGATCTCAGTGTTCTTAGTTACATCTCTGgtaagtattggatcgtgtagatgtagacgtagctatgtcttatggattttgaatatttttttttatgaagcttggtatatacatagtcacattatacgtaaattgcaagtgtatatggactgaattatcatatccgaggcttgatttctttggtaattcttagtttgggcttctttctttttttctttttcttttttcag
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