1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTCATACACTGCGGCTTTTGTCCTTACCAGATTTCTTGGATGCATCTATTGGCAAGATATTGAAGgtaggaatctcaactaggataaaacaaagctcatggatgagttggcttgctgatccaatgcagaatatgattaattttcatttagtggaacagtaagaag...
species | Vitis vinifera |
transcript | Vv13s0019g04590.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGATGCATCTATTGGCAAGATATTGAAG CTTAAGCAGAAGTTAGCTTCAGCTACTTCAGCCATCAAATCTGTTTTTGGAEST: gi|349822994|gb|FQ399973.1|FQ399973
genomic: GGATGCATCTATTGGCAAGATATTGAAGgtaggaatct ... cctgttacagCTTAAGCAGAAGTTAGCTTCAGCTACTTCAGCCATCAAATCTGTTTTTGGA
EST: TTTTGTCCTTACCAGATTTCTTGGATGCATCTATTGGCAAGATATTGAAG CTTAAGCAGAAGTTAGCTTCAGCTACTTCAGCCATCAAATCTGTTTTTGGA
genomic: TTTTGTCCTTACCAGATTTCTTGGATGCATCTATTGGCAAGATATTGAAGgtaggaatct ... cctgttacagCTTAAGCAGAAGTTAGCTTCAGCTACTTCAGCCATCAAATCTGTTTTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCATACACTGCGGCTTTTGTCCTTACCAGATTTCTTGGATGCATCTATTGGCAAGATATTGAAGgtaggaatctcaactaggataaaacaaagctcatggatgagttggcttgctgatccaatgcagaatatgattaattttcatttagtggaacagtaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaacag