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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattattttctttcttgatgcttctattccttgtttgttgctatataacatgttgaactttcttttttatttaaactcctattttgacag

Basic information

species Vitis vinifera
transcript Vv13s0019g04480.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 7
GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgta--ttattttctttcttgatgcttctattccttgtttgttgctatataacatgttgaactttcttttttatttaaactcctattttgacag
||| ||  ||||||||||||| |||||||||||||||||||| || || |||| ||| || ||||| |||||||||||||  || ||    ||  |  || ||||||  | | |   |   |||   | |||    || || | || |  |     |  | |||  | ||
GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgttgatattggttctgtttctatctcatatacctgaatattccagatgactgacattttgttattgtgtgtttgttttttcaatag

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G20780.1 (Glycine max), 5'ss of exon 7
GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattattttctttcttgatgcttctattccttgtttgttgctatataacatgttgaactttcttttttatttaaactcctattttgacag
||| ||  ||||||||||||| |||||||||||||| ||||| || || |||| ||| || ||||| ||||||||||||||  | ||  |  | | |   | | |  ||  |   |   ||| | | |||    || || | || |  |     |  | |||  | ||
GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgttgatattggctctctttctctctcatacctgaatatttcagatgactgacattttgttattgtgtgtttgttttttcaatag

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G33910.3 (Glycine max), 5'ss of exon 4
GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattattttctttcttgatgc--------------ttctattccttgtttgttgctatataacatgttgaactttcttttttattta---aactcctattttgacag
||| ||  | || |||||| | ||||||||||||||||| || || || |||||||| || ||||| |||||| ||||||   | |  ||  |  ||||              |||| |  |   ||  | |||   |||     || |||  | |||||  ||    || |  |  |    |||
GTCTCTTGTGGCGAACTTAGCAGCTGCAAATTGCTACAAATCTGATCATTTGAAGAGACCAGAAAATTGGGCACTAGgtaccctgtcattggtctatgcaggctctcttttatttctgtctccacttcatagctgactaattcagtggactgacattttttattgtgcaattttttctcacgcag

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G36630.1 (Glycine max), 5'ss of exon 7
GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattattttctttcttgatgctt-ctattccttgtttgttgctatataacatgt-tgaactttcttttttatttaaactcctattttgacag---------------
||| ||  | || |||||| | ||||| |||||||||||||| || || |||||||| || ||||| |||||| ||||||   | |  ||  |  || |   || |   || ||| |  ||  |   ||| | |||    |    |  | | | | |  |  ||   ||                
GTCTCTTGTGGCGAACTTAGCAGCTGCCAATTGCTACAAGTCTGATCATTTGAAGAGACCAGAAAATTGGGCACTAGgtaccctgtcgttgttctatacaggctctcttttatttctctctccacttcatatctgagtaattcagtggactgacattttttattgtgcaattttttgtgacgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137599|gb|CB922937.1|CB922937
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110418987|gb|EC985176.1|EC985176
EST:     AGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|71864075|gb|DT013130.1|DT013130
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110687648|gb|EE065296.1|EE065296
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110728204|gb|EE103570.1|EE103570
EST:     AAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|351023138|gb|FQ432521.1|FQ432521
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|351023529|gb|FQ432912.1|FQ432912
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGTCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|351038074|gb|FQ460816.1|FQ460816
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|352794243|gb|FQ479485.1|FQ479485
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|71860280|gb|DT009335.1|DT009335
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|30132011|gb|CB917350.1|CB917350
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|71861873|gb|DT010928.1|DT010928
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGGTTTTTCCTG
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTG
EST: gi|161716356|gb|FC066867.1|FC066867
EST:     AAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110693709|gb|EE070177.1|EE070177
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|349824265|gb|FQ417652.1|FQ417652
EST:     AAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|352794240|gb|FQ479482.1|FQ479482
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110391898|gb|EC956929.1|EC956929
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|71859146|gb|DT008201.1|DT008201
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGT
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGT
EST: gi|351028349|gb|FQ427245.1|FQ427245
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110708040|gb|EE085129.1|EE085129
EST:     AAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110399344|gb|EC965847.1|EC965847
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|71860232|gb|DT009287.1|DT009287
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATT
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATT
EST: gi|71865109|gb|DT014164.1|DT014164
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|71864474|gb|DT013529.1|DT013529
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|351013485|gb|FQ425516.1|FQ425516
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110703696|gb|EE080770.1|EE080770
EST:     AAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|71863288|gb|DT012343.1|DT012343
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|27581929|gb|CB004624.1|CB004624
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|351026422|gb|FQ428434.1|FQ428434
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110689258|gb|EE065335.1|EE065335
EST:     AAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|161712338|gb|FC061663.1|FC061663
EST:     AAATTGCTACAAGTCTGACCATTTGAAGAGGCCTGATAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTTCTAT
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTT-CTAT
EST: gi|71862297|gb|DT011352.1|DT011352
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|30125628|gb|CB910967.1|CB910967
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|351038237|gb|FQ460929.1|FQ460929
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|352786981|gb|FQ476014.1|FQ476014
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110685346|gb|EE063661.1|EE063661
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|71860319|gb|DT009374.1|DT009374
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACT
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACT
EST: gi|110685881|gb|EE062990.1|EE062990
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|30129600|gb|CB914939.1|CB914939
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110726165|gb|EE101710.1|EE101710
EST:     AAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110715240|gb|EE093065.1|EE093065
EST:     AAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|30129081|gb|CB914420.1|CB914420
EST:     AAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|110698283|gb|EE075646.1|EE075646
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: gi|71864037|gb|DT013092.1|DT013092
EST:     AAATTGCTACAAGTCTGAACACTTGAAGAGGCCTGAAAACTGGGCACTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTT
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTT
EST: gi|46917497|gb|CN546826.1|CN546826
EST:     AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAG                         TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: AAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattattttctttcttgatgcttctattccttgtttgttgctatataacatgttgaactttcttttttatttaaactcctattttgacag

- - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG