1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtccttccatgaatggaatttctgaaacttctgacattttcctctcattgtttttacttgtgataggtatcccattaaagcgtttctttatgttta...
species | Vitis vinifera |
transcript | Vv13s0019g04310.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCAGTACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTTTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|351038272|gb|FQ460964.1|FQ460964
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|351046934|gb|FQ454544.1|FQ454544
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|45771650|gb|CN007502.1|CN007502
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|349809523|gb|FQ414413.1|FQ414413
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|351038723|gb|FQ464589.1|FQ464589
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|110366533|gb|EC930443.1|EC930443
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|349809479|gb|FQ414369.1|FQ414369
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|349811587|gb|FQ409583.1|FQ409583
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|349822732|gb|FQ398119.1|FQ398119
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|349814723|gb|FQ409946.1|FQ409946
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|110426990|gb|EC993420.1|EC993420
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|32459794|gb|CD800968.1|CD800968
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGAEST: gi|351028489|gb|FQ444770.1|FQ444770
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTTTGAAATCATGGATTTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtccttccatgaatggaatttctgaaacttctgacattttcctctcattgtttttacttgtgataggtatcccattaaagcgtttctttatgttta
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