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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTTGTGGAAGATTTGAAATTTCTGATGAGGATAGGGGTCACACCTTGGGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAGgtattagttcgtagttttccacttctatatttacaagtcatattgcatgtaaaaagcaatgcaattttattttttttttctaatataggatgcaaatatc...

Basic information

species Vitis vinifera
transcript Vv13s0019g04120.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110408617|gb|EC974254.1|EC974254
EST:     GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAG                         AGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
genomic: GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAGgtattagttc ... cgaattgcagAGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
EST: gi|32460792|gb|CD801966.1|CD801966
EST:     GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAG                         AGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
genomic: GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAGgtattagttc ... cgaattgcagAGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
EST: gi|110388511|gb|EC953269.1|EC953269
EST:     GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAG                         AGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
genomic: GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAGgtattagttc ... cgaattgcagAGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
EST: gi|110418019|gb|EC984128.1|EC984128
EST:     GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAG                         AGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
genomic: GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAGgtattagttc ... cgaattgcagAGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
EST: gi|22008865|gb|BQ793899.1|BQ793899
EST:     GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAG                         AGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
genomic: GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAGgtattagttc ... cgaattgcagAGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
EST: gi|30255752|gb|CB971884.1|CB971884
EST:     GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAG                         AGAAAGAGGTGCTCGACCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
genomic: GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAGgtattagttc ... cgaattgcagAGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
EST: gi|110389130|gb|EC953946.1|EC953946
EST:     GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAG                         AGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
genomic: GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAGgtattagttc ... cgaattgcagAGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
EST: gi|110402278|gb|EC959746.1|EC959746
EST:     GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAG                         AGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC
genomic: GGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAGgtattagttc ... cgaattgcagAGAAAGAGGTGCTCGAGCACTGGAAGAAAGGTTAGCAGTTGAGAGGTTGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATGTTGTGGAAGATTTGAAATTTCTGATGAGGATAGGGGTCACACCTTGGGAGGTGCCCCATTGCCTGGCTCTGATCCCATTGAAGCATCTAGAAGAAGgtattagttcgtagttttccacttctatatttacaagtcatattgcatgtaaaaagcaatgcaattttattttttttttctaatataggatgcaaatatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaata