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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGCTCACATCAACTTCAGAGGTGTATGGTGATCCTCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgctgtcatattcttgtgtaacttgagattattatggcaagcagagcagagttatttttcatgtgaaaatgtattcatgggtttttgttaaaa...

Basic information

species Vitis vinifera
transcript Vv13s0019g00840.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110700937|gb|EE078028.1|EE078028
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAAGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|30132964|gb|CB918303.1|CB918303
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|33410540|gb|CF216167.1|CF216167
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|71882833|gb|DT031888.1|DT031888
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110703601|gb|EE080591.1|EE080591
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCANGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110690502|gb|EE067657.1|EE067657
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110702160|gb|EE080556.1|EE080556
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|22012135|gb|BQ797169.1|BQ797169
EST:     AGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: AGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|156736486|gb|EV240607.1|EV240607
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110359526|gb|EC921159.1|EC921159
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|71859225|gb|DT008280.1|DT008280
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110369469|gb|EC933629.1|EC933629
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110357315|gb|EC920771.1|EC920771
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGACACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110723901|gb|EE099257.1|EE099257
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|30132893|gb|CB918232.1|CB918232
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110720753|gb|EE096961.1|EE096961
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGATGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110721290|gb|EE098120.1|EE098120
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGGCTGAA-CTCTGATG
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGG-CTGAAACTCTGATG
EST: gi|110727671|gb|EE104694.1|EE104694
EST:     TCTTGTGCATCCACAGGAAGAAAGCTACTGGGGCAATGTCAATCCGAAAA                         GAATCAGGAGTTGCTATGATGAAGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110714087|gb|EE090592.1|EE090592
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110719051|gb|EE096588.1|EE096588
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110687991|gb|EE066031.1|EE066031
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110373757|gb|EC938084.1|EC938084
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|33407947|gb|CF213574.1|CF213574
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|71862913|gb|DT011968.1|DT011968
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110692310|gb|EE071412.1|EE071412
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|110356627|gb|EC919593.1|EC919593
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
EST: gi|30299440|gb|CB976234.1|CB976234
EST:     TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAG                         GAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT
genomic: TCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgc ... tatattacagGAGTCAGGAGTTGCTATGATGAGGGAAAGCGAGTGGCTGAAACTCTGATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTTTGCTCACATCAACTTCAGAGGTGTATGGTGATCCTCTTGTGCATCCACAGGAAGAGAGCTACTGGGGCAATGTCAATCCGATAGgtatatttgctgtcatattcttgtgtaacttgagattattatggcaagcagagcagagttatttttcatgtgaaaatgtattcatgggtttttgttaaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatg