Sequence
atgc intronic sequence ATGC exonic sequenceGATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAAgtattcgactcaatatggttatctttgtattgtttatttatttatttttatagaacatgagcattataatattaaatatgctcttcttttaacctaaata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G029055_T01 (Zea mays), 5'ss of exon 7
GATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAAgt-attcgactcaat-atggttatctttgtatt-gtttatttatttatttttatagaacatgagcattataatattaaatatgctcttcttttaacctaaata
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GACATATTACGGTTTCATGCAGTTTATTGGCCAGCCATGTTAATGTCAGCAGGTTTAAGTGTTCCTGATACAGTTTTTGGTCATGGATTCTTGACTAAGgtgatcttacttatttacaagtgtacttgtttccacttctacatccctgatgatagtatggcactctaccataagtaaaaataatgagggcagtagcaat---
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 7
GATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAAgtattcg-actcaatatggttatctttgtattgtttatttatttatttttatagaacatgagcattataatattaaatatgctcttcttttaacctaaata
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GATATTCTACGCTTCCATGCTGTTTACTGGCCAGCTATGCTAATGTCTGCTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAGgtatttgtagttgagcctatttactatcttaagtttcttc-ttgaggtagctgtaatgatacggccttgaggtcaaggctattcatttcctgagaagtgtt
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 7
GATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAAgtattcg-actcaatatggttatctttgtattgtttatttatttatttttatagaacatgagcattataatattaaatatgctcttcttttaac-ctaaata---
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GATATTCTACGCTTCCATGCTGTTTACTGGCCAGCTATGCTAATGTCTGCTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAGgtatttgtagttaaacctatttagtatttactatct-tatgtttcttcttgtgg----tagctctaataatatcaattcgggtttgaggacaaggctattcatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30255117|gb|CB971564.1|CB971564EST: CTGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAA GATGGAATGAAGATGGGAAAGTCATTGGGGAATACACTTGAACCATATGAT
genomic: CCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAAgtattcgact ... aaaattttagGATGGAATGAAGATGGGAAAATCATTGGGGAATACACTTGAACCAAATGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAAgtattcgactcaatatggttatctttgtattgtttatttatttatttttatagaacatgagcattataatattaaatatgctcttcttttaacctaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctaaa