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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTAACCTCATGACGATGTCATCTAGATTAAGTAACAACAGAGGAAAGCCATCAATGGATGTGGCTGTGAGCGTCCTAATTAAACTTGTTATTGACATgtacgtttcattgcatttgtttgctgatattactttattcgcatgcttgaattgcatacgtttacaacctgttctacagtctcgtctatatgttgaagaa...

Basic information

species Vitis vinifera
transcript Vv13s0019g00680.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G52540.1 (Glycine max), 5'ss of exon 4
ATACTAACCTCATGACGATGTCATCTAGATTAAGTAACAACAGAGGAAAGCCATCAATGGATGTGGCTGTGAGCGTCCTAATTAAACTTGTTATTGACATgtacgtttcattgcat--ttgtttgctg-atattactttattcgcatgcttgaattgcatacgtttacaacctgttctacagtctcgtctatatgttgaagaa
|||| ||    |  ||    ||| ||||| ||||||| ||||| ||||| ||||||| ||||||||||||||||||||| ||||||||  ||||||||||||| |||||| |  ||  |||| |  |   | ||| |   ||        | | || | ||     | |    ||| ||| || |  ||   || |  |    
ATACCAATGCTACTACAGCATCAACTAGACTAAGTAATAACAGTGGAAAACCATCAACGGATGTGGCTGTGAGCGTCCTTATTAAACTAATTATTGACATgtatgtttcaattaattgttgtcttttatgttttattccttttctggttatcattttcttagccccaaataaagttttactgtatattcctaatttctat---

upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G10370.1 (Glycine max), 5'ss of exon 7
ATACTAACCTCATGACGATGTCATCTAGATTAAGTAACAACAGAGGAAAGCCATCAATGGATGTGGCTGTGAGCGTCCTAATTAAACTTGTTATTGACATgtacgtttcattgcatttgtttgctgatattactttattcgcatgcttgaattgcatacgtttacaacctgttctacagtctcgtctatatgttgaagaa---
|||| ||  | |  ||    ||| ||||| ||||||| ||||| ||||| ||||||| ||||||||||||||||||||| ||||||||  ||||||||||||| |||||| |  | |||||  ||  |||   ||||||| | |   ||  |  |||  | |||   ||   |  |   || | |   | |  |  | |    
ATACCAATGTTACTACAGCATCAACTAGACTAAGTAATAACAGTGGAAAACCATCAACGGATGTGGCTGTGAGCGTCCTTATTAAACTAATTATTGACATgtatgtttcaat-taattgttgtcttttat-gttttattc-cttttctggttatcatttgcttagccccaaataaattttcccatggttttactatatattcc

upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G23240.1 (Glycine max), 5'ss of exon 10
ATACTAACCTCATGACGATGTCATCTAGATTAAGTAACAACAGAGGAAAGCCATCAATGGATGTGGCTGTGAGCGTCCTAATTAAACTTGTTATTGACATgtacgtttcattgcatttgtttgctgatattactttattcgcatgcttgaattgcatacgtttacaacctgttctaca-gtctcgtctatatgttgaagaa
|||| ||  | |||| ||||||| ||||  |||| || ||||| ||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||| ||| |||||| |||| || ||  ||| |  || |||| || ||| || |  |  ||  |  | |||  || || |  |     | |||||   | |  |||
ATACCAATGTTATGATGATGTCAACTAGGCTAAGAAATAACAGTGGAAAACCATCAATGGATGTGGCTGTTAGCATCCTTATTAAACTTGTTATTGACACgtatgtttcaatgcacttattgtctgtttatattttaatc-cattctagggtcacactctctaacacactcttttgaacacaccatctatcactggttgaa

upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G43560.2 (Glycine max), 5'ss of exon 7
ATACTAACCTCATGACGATGTCATCTAGATTAAGTAACAACAGAGGAAAGCCATCAATGGATGTGGCTGTGAGCGTCCTAATTAAACTTGTTATTGACATgtacgtttcattgcatttgtttgctgatattactttattcgcatgcttgaattgcatacgtttacaacctgttctacagtctcgtctatatgttgaagaa-----------------------------------------------
| | || |    | | ||||||| ||||  |||| || ||||| |||||  ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||| | || || ||  ||| |  || ||| ||  ||| ||||  |   ||| |  ||||    ||     | | | || || ||  |||                                                   
AAAATACCAATGTTATGATGTCAACTAGGCTAAGAAATAACAGTGGAAAAGCATCAATGGATGTGGCTGTTAGCGTCCTTATTAAACTTGTTATTGACACgtatgtttcaatccacttattatctgtttatattttcttt-cattcttggct---atagggatacagttggtatgggattattgtttacattctgatagtgggtgggctgttctgagttgatagtgtgtgggtggactgttttgtag

upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G12590.1 (Arabidopsis thaliana), 5'ss of exon 7
ATACTAACCTCATGACGATGTCATCTAGATTAAGTAACAACAGAGGAAAGCCATCAATGGATGTGGCTGTGAGCGTCCTAATTAAACTTGTTATTGACATgtacgtttcattgcatttgtttgctgatattactttat-tcgcatgcttgaattgcatacgtttacaacctgttctacagtctcgtctatatgttgaagaa-----------------------------
 | | || |  |||||  | ||| |   |||||  | ||| |  |||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||| | |   |    | |  |   | || |||  |||| | | ||| |  ||||       || |  |    | ||  |     ||  | | | | | |                               
CTTCAAATCAAATGACTGTATCACCCCAATTAACGAGCAAGACTGGAAAGCCGTCGATGGATGTGGCTGTGAGCGTCCTAATTAAGCTTGTTATCGACATgtaagctctttgttttataatatgttatcttatcttatgtagtatgtt--aattaagatttttaatcattcttcctttataactgttgacaagcttatggcacaaccgttttgcaaaacctgttttttag