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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGgtctctctctctctctccccctccctcttagagcaaatatgcatgtgaactaagcatattcttttttggttgtagattaatggtaataatagaaataagttttgatgatacag

Basic information

species Vitis vinifera
transcript Vv12s0142g00360.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110728991|gb|EE105103.1|EE105103
EST:     GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG                         ATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
genomic: GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGgtctctctct ... gatgatacagATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
EST: gi|110726323|gb|EE102002.1|EE102002
EST:     GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG                         ATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
genomic: GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGgtctctctct ... gatgatacagATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
EST: gi|110715529|gb|EE093682.1|EE093682
EST:     GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG                         ATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
genomic: GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGgtctctctct ... gatgatacagATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
EST: gi|110730325|gb|EE107273.1|EE107273
EST:     GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG                         ATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
genomic: GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGgtctctctct ... gatgatacagATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
EST: gi|30298144|gb|CB974938.1|CB974938
EST:     GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG                         ATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
genomic: GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGgtctctctct ... gatgatacagATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
EST: gi|30135782|gb|CB921120.1|CB921120
EST:     GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG                         ATAGCTGAGAATGAGAGAGCCCAACAGCANATGAACCTGATGCCAGGGTCT
genomic: GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGgtctctctct ... gatgatacagATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
EST: gi|110710338|gb|EE086596.1|EE086596
EST:     GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG                         ATAGCTGAGAATGAGAGA-CCCAACAGCAAATGAACCTGATGCCAGG-TCT
genomic: GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGgtctctctct ... gatgatacagATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
EST: gi|30133145|gb|CB918484.1|CB918484
EST:     GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG                         ATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
genomic: GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGgtctctctct ... gatgatacagATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
EST: gi|30298778|gb|CB975572.1|CB975572
EST:     GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG                         ATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
genomic: GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGgtctctctct ... gatgatacagATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
EST: gi|110726263|gb|EE101892.1|EE101892
EST:     GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAG                         ATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT
genomic: GAGATTGAGCTCCAAAACAGTAACTTATTTCTGCGAGCACAGgtctctctct ... gatgatacagATAGCTGAGAATGAGAGAGCCCAACAGCAAATGAACCTGATGCCAGGGTCT