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GTCCGACAATTTGGTTTCTTGCCATCATCTACTTCTTATCAGGGGTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactatttatggttattccaaacatgactcccattatatcatccacactagacatatatcagacttccaattgtaggggatgggtcctgtcacgccatt...
species | Vitis vinifera |
transcript | Vv12s0059g01930.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGEST: gi|77584192|gb|DV221151.1|DV221151
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGEST: gi|27586086|gb|CB008781.1|CB008781
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGEST: gi|110385536|gb|EC950069.1|EC950069
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGEST: gi|110388736|gb|EC953515.1|EC953515
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGEST: gi|27584919|gb|CB007614.1|CB007614
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTEST: gi|110376126|gb|EC941168.1|EC941168
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTT
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGEST: gi|110357026|gb|EC920280.1|EC920280
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGEST: gi|32245954|gb|CD711773.1|CD711773
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGEST: gi|71870414|gb|DT019469.1|DT019469
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGEST: gi|110699817|gb|EE077160.1|EE077160
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAN GACTGATAGTGCTCTAAAAGT-CGGGGGGTTTTTCTTGTTTTACCTGEST: gi|71870410|gb|DT019465.1|DT019465
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAA-GTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTGEST: gi|110722937|gb|EE099679.1|EE099679
genomic: GTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: GTTC-AGGAGCTTATGTGTTGTGGTAACGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAGTTCGGGTGGGTTTTCTTGTTTTAACGGEST: gi|110722049|gb|EE097937.1|EE097937
genomic: -TTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAGTTCGGGTGGTTTTTCTTGTTTTACCTG
EST: TTCCAAGAGCTTATGTGTTGGGGGTATCGTCCTCTTTATCGTGCCATGAG GACTGATAGTGCTCTAAAG
genomic: TTCCAGGAGCTTATGTGTTGTGG-TATCGTCCTCTTTATCGTGCCATGAGgtactattta ... cttttatcagGACTGATAGTGCTCTAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCGACAATTTGGTTTCTTGCCATCATCTACTTCTTATCAGGGGTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactatttatggttattccaaacatgactcccattatatcatccacactagacatatatcagacttccaattgtaggggatgggtcctgtcacgccatt
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacatga