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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCTTCTTTTTCATGATTCCCATTGCACTGGTACAGTCCCTTGCAAACATTGAGGGAATTGAGAAGGCAGTACCTTTTCTTAAGCCTTTAATTGAGACgtgagtttgctagtcttctttactacttgttgctatctcagaatatttattgtcatctgttctcaaatttttgatagtatctttttctttgtgtatatat...

Basic information

species Vitis vinifera
transcript Vv12s0059g01090.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g01090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g35050.3 (Oryza sativa), 5'ss of exon 8
TTACCTTCTTTTTCATGATTCCCATTGCACTGGTACAGTCCCTTGCAAACATTGAGGGAATTGAGAAGGCAGTACCTTTTCTTAAGCCTTTAATTGAGACgtgagtttgctagtcttctttactacttgttgctatctcagaatatttattgtcatctgttctcaaatttttgat-agtatctttttctttgtgtatatat
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TGAACTTCTTTTATGTGCTCCCGATTGCATTTGTTCAGTCCCTTGCAAATATTGAAGGGATTGAGAAGGCAGCTCCATTTCTGAAGCCTTTGATTGAAATgtacgtgcatttatctctttcttctgcaataattattatcagttgttcctcaattttttttttcagttgaaagcttaccacatactgcttttctagtatt-

upper sequence: Vv12s0059g01090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G43910.2 (Glycine max), 5'ss of exon 8
TTACCTTCTTTTTCATGATTCCCATTGCACTGGTACAGTCCCTTGCAAACATTGAGGGAATTGAGAAGGCAGTACCTTTTCTTAAGCCTTTAATTGAGACgtgagtttgctagtcttctttactacttgttgctatctcagaatatttattgtcatctgttctcaaatttttgatagtatctttttctttgtgtatatat--
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TGACATTCTTTTTCATGATTCCCATAGCATTCGTACAGTCACTGGCTAACATTGAAGGCATTGAAAAAGCAGCACCTTTCCTAAAATCTTTTATTGAAATgtaagtgttatttatttatttatttattttt-caatgtcatctttttcttttttgcattaatacatatttctgtccat-tggttgactttgtatataaaatt