Sequence
atgc intronic sequence ATGC exonic sequenceGAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtatctaatatgttaatctctattatgatttcttttgtgggtgtcatccataataatctgaaaagtcttataatttagttttcctttcttattttagata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g38050.1 (Oryza sativa), 5'ss of exon 7
GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtatctaatatgttaatctctattatgatttcttttgtgggtgtcatccataataatctg--aaaagtcttataatttagttttcctttcttattttagata-
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GAATTGGCTGCAAAGACGAAATCGTTCTTTGTGACAGCCTTGTCCATGTGGGATGCAGAGTACTACATTAAAGTGGATGATGATGTACATGTAAATATAGgtgtgcattac--taccctctgatctaacatcatatcccttcattaagtgttttt-tctgctaaaattttgattagttcatatattttacttacattaaattt
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 5'ss of exon 8
GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgta----tcta-atatgttaatctctattat-gatttcttttgtgggtgtcatccataataatctgaaaagtcttataatttagttttcctttcttattttagata
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GCACTATCTGGCAAAACCAAGACATACTTTGCTACGGCTGTTTCATTGTGGGATGCAGACTTTTATGTGAAGGTTGATGATGACGTGCATGTAAACATAGgtaaatctccatatcttttatgcccttctattgttcttttttgaacattttatcgatcttaagatgagaggaaagtgatcatatctgtgtgccgccatca------
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 7
GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtatctaa--tatgttaatctcta-ttatgatttcttttgtgggtgtcatccataataatctgaaaagtcttataatttagttttcctttcttatt-ttagata-----------------------------------------------------------------------------------------
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GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGgtatataaagtttctcaatctctaattatctaaccttgcatgaggagtttgcaattgaaattgttgtatccttttaactagttccacatactaactatcatccatggattcatgttccgtacatacttagtatgcatcatgtaatttctatcttaatatttttcttagtatgccctattcaatcctttttcag
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G38500.1 (Glycine max), 5'ss of exon 7
GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtatctaa--tatgttaatctctattatgatttcttttgtg-ggtgtcatccataataatctgaaaagtcttataatttagttttcctttc--ttattttagata---------------------------------------------------------------------------------------
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GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATTAAAGTCGACGACGATGTTCATGTAAATATAGgtatttaaagtttctcaatctcaataatctaatctttaatgaggagtttgcaattgaaattgttgtattcttttaacttgttccacatgctaaccatcatccatggcttcatgttccatacatactaagtatgcatcatgtaatttctatcgaaatatttttcttagcatgtcctattcaatcctttttcag
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 7
GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtatctaatatgttaatctctattatgatttcttttgt------gggtgtcatccataataatctgaaaagtc-ttataatttagttttcctttcttattttagata-------------------------
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GAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtat-taatagtaaagtttctg--ataatctcttatgtataaaagcatgagttttatgtttctatagtaaataaccatgatgttgttttaatatgtactgtttgtcttagcattatattctttctgtttcag
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G46230.1 (Glycine max), 5'ss of exon 7
GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtatctaatatgttaatctctattatgatttcttttgtgggtgt-catc----cataa-taatctgaaaagtcttataatttagttttcc-tttcttattttagata-------------------------------------------------------------------------------------------
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GAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtattaatagttctaaagtttctgataatctcttactttattatgtatcaaggcatgagttttattgtaaacctcctgacactgtcttcgattcctaagtgtaaaaaaaagcatgagttttatgtttctatagtaagtaatcatgatgttgttttagtatgtactttttgtcttagtgtcatattctttcggtttcag
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 7
GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtat-ctaatatgttaatctctattatgatttcttttgtgggtgtcatccataataatctgaaaagtcttataatttagttttcctttcttattttagata
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GAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGgtaagctgaacaatcttcctacattcaatttctatttcccagtttgtatgttgctcacatcaataacgtggtcaattgttttgttgaaaatatctgcag--
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G05170.2 (Arabidopsis thaliana), 5'ss of exon 7
GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgta---tctaatatgttaatctctattatgatttcttttgtgg-gtgtcatccataataatctgaaaagtcttataa-tttagttttcctttcttattttagata
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GAGTTGTCAGGCAAGACGAAAACTTACTTTTCTACAGCATTTTCGATGTGGGATGCAGATTTCTATGTCAAAGTAGATGATGATGTTCATGTCAATATAGgtaagttctaaaatcaacgaattgaat-tggttttctttatgtcattttgcataccttatactggcaatactaatgggttcaatgtttcactgaaatgtctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30137885|gb|CB923223.1|CB923223EST: GGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAG CAACACTCGGAGAAACTTTAGTTAGACACAGNNNNNNNCCTCGGGTGTATA
genomic: GGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtatctaata ... attgttgcagCAACACTCGGAGAAACTTTAGTTAGACACAGAAAAAAACCTCGGGTGTATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtatctaatatgttaatctctattatgatttcttttgtgggtgtcatccataataatctgaaaagtcttataatttagttttcctttcttattttagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagt