1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAATAATTAAGCGGAGGAAAGAAGCCTTCTTTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAGgttggtgttttggtattacttttttaatgaatattcctggtctcccactgtgagatcttatcagaatctattattcctagtttcttgatgaggttatacatcaaaaccatgcaattggacacttggtgaggttggcaccactagttccaagctattgaggtaatgacaaattaccatgacatgcag
species | Vitis vinifera |
transcript | Vv12s0057g01340.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAG GCTCATACATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCAEST: gi|110416919|gb|EC982928.1|EC982928
genomic: TTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAGgttggtgttt ... tgacatgcagGCTCATAGATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCA
EST: TTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAG GCTCATACATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCAEST: gi|110410989|gb|EC976685.1|EC976685
genomic: TTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAGgttggtgttt ... tgacatgcagGCTCATAGATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCA
EST: TTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAG GCTCATACATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCAEST: gi|71884013|gb|DT033068.1|DT033068
genomic: TTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAGgttggtgttt ... tgacatgcagGCTCATAGATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCA
EST: TTTCCGAGTTGGGGAAGACAGCATTGTCATCAGCTGGCACTTCTGCCAAG GCTCATACATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCAEST: gi|110359762|gb|EC921857.1|EC921857
genomic: TTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAGgttggtgttt ... tgacatgcagGCTCATAGATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCA
EST: TTTCCGAGTTGGGGAAGACAGCATTGTCATCAGCTGGCACTTCTGCCAAG GCTCATACATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCAEST: gi|110368210|gb|EC932179.1|EC932179
genomic: TTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAGgttggtgttt ... tgacatgcagGCTCATAGATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCA
EST: TTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAG GCTCATACATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCA
genomic: TTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAGgttggtgttt ... tgacatgcagGCTCATAGATCGAGTGGTCCAGTGGATGGTGAGGGGCCTGCCTGGGCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATAATTAAGCGGAGGAAAGAAGCCTTCTTTTCCGAGTTGGGGAAGACAGCATGGTCATCAGCTGGCACTCCTGCCAAGgttggtgttttggtattacttttttaatgaatattcctggtctcccactgtgagatcttatcagaatctattattcctagtttcttgatgaggttatacatcaaaaccatgcaattggacacttggtgaggttggcaccactagttccaagctattgaggtaatgacaaattaccatgacatgcag
- - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG