Sequence
atgc intronic sequence ATGC exonic sequenceGCCCATTTGTGCTCGAACAGCATGGGCCTATGGGAAGGCCGGTGGCCGCATTTCTCATGCTTTATCAGTTTACAGCTGTCAACTTCGTCAACCAAATCAGgtttgaaattcattttcatatttacctgtggacatattttgcaactgatggggcaggaaagtatagtgataataatggaatacactaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g01920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os05g01470.1 (Oryza sativa), 5'ss of exon 6
GCCCATTTGTGCTCGAACAGCATGGGCCTATGGGAAGGCCGGTGGCCGCATTTCTCATGCTTTATCAGTTTACAGCTGTCAACTTCGTCAACCAAATCAGgtttgaaattcattttcatatttacctgtggacatattttgcaactgatggggcaggaaagtatagtgataataatggaatacactaacag
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GCCTGTCTGTGCACGCACAGCTTGGGCATACATGAAATCTGGTGGTCGTATTTCACATGCTTTGTCAGTGTATAGCTGTCAACTTCGCCAACCCAACCAGgttccttgtgtattctt-tagatttctaaaagca-atgtaatgacaggaaaaatactaattcatataactttcag----------------
upper sequence: Vv12s0035g01920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G00210.1 (Glycine max), 5'ss of exon 6
GCCCATTTGTGCTCGAACAGCATGGGCCTATGGGAAGGCCGGTGGCCGCATTTCTCATGCTTTATCAGTTTACAGCTGTCAACTTCGTCAACCAAATCAGgtttgaaa-ttcatt-----ttcatatttacctgtggacatattttgcaactgatggggcaggaaagtatagtgataataatggaatacactaacag
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GCCTATTTGTGCAAGAACCGCGTGGACTTACGGAAAGTCTGGTGGCAGCATTTCCCATGCTTTATCAGTATACAGTTGTCAACTTCGTCACCCTAACCAGgtggggtacttcattaaagcttggtaattcactacaagaatattt----attgccatggaggaaatttgatgcactaggtcatttgtatactgacag
upper sequence: Vv12s0035g01920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G28490.1 (Glycine max), 5'ss of exon 6
GCCCATTTGTGCTCGAACAGCATGGGCCTATGGGAAGGCCGGTGGCCGCATTTCTCATGCTTTATCAGTTTACAGCTGTCAACTTCGTCAACCAAATCAGgtttgaaattc------attttcatatttacctgtggacatattttgcaactgatggggcaggaaagtatagtgataataatgga-atacactaacag
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GCCTATTTGTGCAAGGACCGCGTGGGCTTACGGAAAGTCTGGTGGCAGCATTACCCATGCTTTATCAGTATACAGTTGTCAACTTCGTCACCCTAACCAGgtggggtacttcggtaaagcttgttaattcactacaagaatatttatttcc--atgg---aggaaatttgatgcacaatgtcgtttgtatactgacag
upper sequence: Vv12s0035g01920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G49810.1 (Arabidopsis thaliana), 5'ss of exon 6
GCCCATTTGTGCTCGAACAGCATGGGCCTATGGGAAGGCCGGTGGCCGCATTTCTCATGCTTTATCAGTTTACAGCTGTCAACTTCGTCAACCAAATCAGgt---ttgaaattcattttcatatttacctg-tggacatattttgcaactgatggggcaggaaagtatagtgataataatggaatacactaacag
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ACCAATTTGTGCTCGAACAGCATGGGCCTATGGGAAGGCTGGTGGCCGAATCTCCCATGCTTTATCGGTTTATAGTTGTCAGATTCGCCAACCAAATCTGgtgggtagataaagaagctttcatttacttaatgtgtttatcttaccat-----gaacaacaaagta-gtcaattaagttggttgtgattgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857495|gb|DT006550.1|DT006550EST: TTTCTCATGCTTTATCAGTTTACAGCTGTCAACTTCGTCAACCAAATCAG GTGAAAACAATTTTTGAGTTTCTCAAAAATGGCTTCCATGAGATCAGCAGT
genomic: TTTCTCATGCTTTATCAGTTTACAGCTGTCAACTTCGTCAACCAAATCAGgtttgaaatt ... acactaacagGTGAAAACAATTTTTGAGTTTCTCAAAAATGGCTTCCATGAGATCAGCAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCCATTTGTGCTCGAACAGCATGGGCCTATGGGAAGGCCGGTGGCCGCATTTCTCATGCTTTATCAGTTTACAGCTGTCAACTTCGTCAACCAAATCAGgtttgaaattcattttcatatttacctgtggacatattttgcaactgatggggcaggaaagtatagtgataataatggaatacactaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG