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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacactgttaatttcagatgtagttgacttgccttcgcttttcatcatttccaagtcctgttatttaggcttttatctaaccatcttctggtacag

Basic information

species Vitis vinifera
transcript Vv12s0035g01060.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 5'ss of exon 8
TTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacactgttaatttcagatgtagttgacttgccttcgcttttcatcatttccaagtcctgttatttaggcttttatctaaccatcttctggtacag
|||| | || ||||| |||||||||||||| ||||||||||| ||||| || ||| | |||||||| |||||||| ||||| ||  | || || ||||||||  | || |  |   | || || |  |||  ||   |    || | ||  |    |  | |    ||  ||                            
TTACAGGGCACCAGAGCTCATATTTGGTGCAACTGAATATACTACTGCCATTGATTTGTGGTCTACAGGCTGTGTCATGGCAGAGCTTCTGCTTGGACAGgt--ttcattcatgcataca-atatt-ttgcttttgttcaatttcttattctaataacattcatccatgcag----------------------------

upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G138676_T02 (Zea mays), 5'ss of exon 8
TTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacactgttaatttcagatgtagttgacttgccttcgcttttcatcatttccaagtcctgttatttaggcttttatctaaccatcttctggtacag
||| || || ||||| |||||||||||||| || |||||||| |||||||| ||| | ||||| || |||||||| ||||| ||  ||||||| ||||||||    ||   | | ||||   |     ||  |   |||  |||||      |||  |    | | ||| |  | | ||                     
TTATCGAGCACCAGAGCTCATATTTGGTGCAACGGAATATACTACTGCTATTGATTTGTGGTCAACAGGCTGTGTCATGGCAGAGCTGCTTCTAGGACAGgtctggcatgttcagtttccc-tccctctggtt---cttacctttttgcttcttctga----tatcattcatccatgtag--------------------

upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 7
TTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacactgttaatttcagatgtagttgacttgccttcgcttttcatcatttccaagtcctgttatttaggcttttatctaacc-atcttctggtacag------
 |||||||| || ||||| |||||||| |||||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||| |    ||  |     | ||||     | ||   ||| | ||||||||||||   ||  |  | | |    ||| || |  |  |  ||   ||  |       
CTACCGTGCTCCGGAACTTATATTTGGGGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatt-tggtgcaagaaaaaaatgtgacaaattt---ttctcatttcatcatttctttgtttt-ctgtcttctttttcattttcctgaagttgaagttgatttgcag

upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 8
TTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacactgttaatttcagatgtagttgacttgccttcgcttttcatcatttccaagtcctgt---tatttaggcttttatctaa---ccatcttctggtacag
 |||||||| || ||||| |||||||| ||||| |||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||| |    | || |    | ||||     | ||   ||| | ||||||||||||   ||  | |   |  ||  || |||  || |    ||  ||    | |||
CTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGgtatttggttctttaaaa-aaatgtgacaaattt---ttctcatttcatcatttctctgttttctgtcttcttttgcattttcctgaagttcaagttgatttgcag

upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 8
TTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacactgttaatttcagatgtagttgacttgccttcgcttttcatcatttccaagtcctgttatttaggcttttatctaaccatcttctggtacag
 || ||||| ||||||||||| |||||||||| |||||| || ||||| || ||||| ||||| ||||| ||||||||||| ||| ||||||| ||||||||   |   || |  || ||   |   |    |   ||   | ||   |   ||||  ||| |  ||||| |     |  ||||     || | ||||||
CTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAACTGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGgttaaagcatgatttttgcattagctatatgttgttctattcattcagtttattccttgtcttactattttgtgcccttgctaat----ttgtcgtacag

upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G57870.3 (Arabidopsis thaliana), 5'ss of exon 9
TTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacactgttaatttcagatgtagttgacttgccttcgcttttcatcatttccaagtcctgttatttaggcttttatctaaccatcttctggtacag
 || ||||||||||| ||||| ||||| ||||| || || || ||||| ||||| || ||||| || || ||||||||||||||| |||| || ||||||||  |  |    ||  ||   || ||| |    |    | | | |||   |||||     ||| ||| | |   |||  |||  |   ||| |  |||||
CTATCGTGCCCCAGAGCTCATTTTTGGAGCCACCGAGTACACAACTGCAATAGACATATGGTCCACAGGTTGTGTGATGGCTGAACTGCTGCTTGGACAGgt--tggagcactatatttgcat-tagcta---tatgcttgttattc--tatttcttcaccctcttactcat-ttttgctctcgcggacttgttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30126156|gb|CB911495.1|CB911495
EST:     TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAG                         CCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
genomic: TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacact ... tctggtacagCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
EST: gi|110726124|gb|EE101641.1|EE101641
EST:     TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAG                         CCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
genomic: TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacact ... tctggtacagCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
EST: gi|27580396|gb|CB003091.1|CB003091
EST:     TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAG                         CCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
genomic: TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacact ... tctggtacagCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
EST: gi|161715603|gb|FC067769.1|FC067769
EST:     TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAG                         CCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
genomic: TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacact ... tctggtacagCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
EST: gi|27579322|gb|CB002017.1|CB002017
EST:     TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAG                         CCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
genomic: TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacact ... tctggtacagCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
EST: gi|156736132|gb|EV240253.1|EV240253
EST:     TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAG                         CCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
genomic: TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacact ... tctggtacagCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
EST: gi|27581595|gb|CB004290.1|CB004290
EST:     TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAG                         CCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
genomic: TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacact ... tctggtacagCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
EST: gi|27581007|gb|CB003702.1|CB003702
EST:     TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAG                         CCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
genomic: TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacact ... tctggtacagCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
EST: gi|30130728|gb|CB916067.1|CB916067
EST:     TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAG                         CCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
genomic: TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacact ... tctggtacagCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
EST: gi|27579129|gb|CB001824.1|CB001824
EST:     TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAG                         CCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG
genomic: TAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGgtagtacact ... tctggtacagCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG