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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTTGATACATTTAATACAGCCGTTGTATCTCCCATCTACTATGTTATGTTTACATCACTAACCATTTTGGCTAGTGTGATCATGTTCAAGgtaatcctttcattgattagaagtttccgaaatccttttattggtggatatgataatgtctaatatgttaatggtttctgtttggatgtttcacttcttt...

Basic information

species Vitis vinifera
transcript Vv12s0035g00720.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G00560.1 (Glycine max), 5'ss of exon 7
GCCCTTGATACATTTAATACAGCCGTTGTATCTCCCATCTACTATGTTATGTTTACATCACTAACCATTTTGGCTAGTGTGATCATGTTCAAGgtaatcctt--tcattgattagaagtttccgaaatccttttattggtggatatgat------aatgtctaatatgttaatggtttctgtttggatgtttcacttcttt
|| || ||||| |||||||| || || |||||||| || || ||||||||||| ||| || | |||||| |||||||||| || ||||| |||||||   ||  |   | | | | |   |  || |     |  ||  | | | | ||      | ||| || | | | |   || | |||   |    | |        
GCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATGTTCACAACATTTACCATTGTGGCTAGTGTTATTATGTTTAAGgtaagttttgttacctaactggtatagttagacactgcctgcttaattgctttaattttaagattgtatattgtataatctgtgtttgtcaaggaaatgc--------

upper sequence: Vv12s0035g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G28940.1 (Glycine max), 5'ss of exon 7
GCCCTTGATACATTTAATACAGCCGTTGTATCTCCCATCTACTATGTTATGTTTACATCACTAACCATTTTGGCTAGTGTGATCATGTTCAAGgtaatcctt--tcattgattagaagtttccgaaatccttttattggtgga----tatgataatgtctaatatgttaatggtttctgtttggatgtttcacttcttt
|| || ||||| |||||||| || || ||||||||||| || ||||||||||| ||  || | |||||| |||||||||| || ||||| |||||||   ||  |   | | | | |   |  || |    || |||  |  |    || |||  | |  | | ||||||     || |  | |||  |  |       
GCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAGgtaagttttgttacctaactggtatagttagacactgcttcattactctaattttaagattgtataaattgtgttaaaataatccggattgattgtatat------

upper sequence: Vv12s0035g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ15113 (Selaginella moellendorffii), 5'ss of exon 7
GCCCTTGATACATTTAATACAGCCGTTGTATCTCCCATCTACTATGTTATGTTTACATCACTAACCATTTTGGCTAGTGTGATCATGTTCAAGgta-atcctttcattgattagaagtttccgaaatccttttattggtggatatgataat-gtctaatatgttaatggtttctgtttggatgtttcacttcttt
||  | ||||| |||||||| || ||||||||||| || |||||||| |||||||| ||  | || ||  | ||||| || ||||||||||||||   | |||||  || |||  | ||  | ||        |   | |  | | ||| |  | |  | |||  |                             
GCGTTAGATACTTTTAATACTGCAGTTGTATCTCCAATTTACTATGTCATGTTTACCTCCTTGACAATCGTAGCTAGCGTCATCATGTTCAAGgttcgttctttc--tgtttactacttcgccaagga-----accagcgtttttaatacttatttggtttgtccag----------------------------

upper sequence: Vv12s0035g00720.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ16080 (Selaginella moellendorffii), 5'ss of exon 7
GCCCTTGATACATTTAATACAGCCGTTGTATCTCCCATCTACTATGTTATGTTTACATCACTAACCATTTTGGCTAGTGTGATCATGTTCAAGgta-atcctttcattgattagaagttt-ccgaaatccttttattggtggatatgataatgtctaatatgttaatggtttctgtttggatgtttcacttcttt
||  | ||||| |||||||| || |||||||||||||| |||||||| |||||||| ||  | || ||  | ||||| || ||||||||||||||   | |||||  || |||  | ||  || |    |    |||  |   |||  |  | | |  | |||  |                             
GCGTTAGATACTTTTAATACTGCAGTTGTATCTCCCATTTACTATGTCATGTTTACCTCCTTGACAATCGTAGCTAGCGTCATCATGTTCAAGgttcgttctttc--tgtttactacttcgccaaggaaccaccattttt---tatact--tatttggtttgtccag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27755040|gb|CB035795.1|CB035795
EST:     ATGTTATGTTTACATCACTAACCATTTTGGCTAGTGTGATCATGTTCAAG                         GACTGGGATAGACAGAATCCAACACAGATTGTCACCGAAATGTGTGGATTT
genomic: ATGTTATGTTTACATCACTAACCATTTTGGCTAGTGTGATCATGTTCAAGgtaatccttt ... cttttatcagGACTGGGATAGACAGAATCCAACACAGATTGTCACTGAAATGTGTGGATTT
EST: gi|110713706|gb|EE089862.1|EE089862
EST:     ATGTTATGTTTACATCACTAACCATTTTGGCTAGTGTGATCATGTTCAAG                         GACTGGGATAGACAGAATCCA-CACAGATTGTCACTGAAATGTGTGGATTT
genomic: ATGTTATGTTTACATCACTAACCATTTTGGCTAGTGTGATCATGTTCAAGgtaatccttt ... cttttatcagGACTGGGATAGACAGAATCCAACACAGATTGTCACTGAAATGTGTGGATTT