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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTTATTTCAGAATGACACGGGATGTTGCTCCTCGGATAGGATATCACAAGCCCGCATTGATTGAATCATTATTCTTCCCTGCCCTTCAGgtgttattacaatttggcctcatattctaataactcacaagttagtctaatattttcattcaattatgttttgtcaccactttgtgtgcatgcactcata...

Basic information

species Vitis vinifera
transcript Vv12s0028g03370.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g03370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G11390.1 (Glycine max), 5'ss of exon 6
GATCCTTATTTCAGAATGACACGGGATGTTGCTCCTCGGATAGGATATCACAAGCCCGCATTGATTGAATCATTATTCTTCCCTGCCCTTCAGgtgttattac-------aatttggcctcatattctaataactcaca-agttagtctaatatttt-cattcaattatgttttgtcaccactttgtgtgcatgcactcata
||||| ||||| ||||||||||| ||||||||||||   || || |  |||||||| || ||||||||||||||||||||||| ||  | ||||| || |||        ||    ||  | |  || |||   | | | ||     |||||||||| | | |   ||  | |  | |  | |||   | | ||        
GATCCATATTTTAGAATGACACGTGATGTTGCTCCTAAAATGGGTTTCCACAAGCCAGCCTTGATTGAATCATTATTCTTCCCAGCATTACAGgtattcttatgtcgcaaaaccatgctactttatcaaatggtttaaagagggcaactaatattttacgtgctgcta-atctaattaaaattttaattccctg--------

upper sequence: Vv12s0028g03370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G25740.1 (Glycine max), 5'ss of exon 6
GATCCTTATTTCAGAATGACACGGGATGTTGCTCCTCGGATAGGATATCACAAGCCCGCATTGATTGAATCATTATTCTTCCCTGCCCTTCAGgtgttattac-------aatttggcctcatattctaat-aactcacaagttagtctaatatttt-cattcaattatgttttgtcaccactttgtgtgcatgcactcata
||||| ||||| ||||||||||| ||||||||||||   || || |  |||||||| || ||||||||||||||||||||||| ||  | ||||| || |||        ||    ||  | |  || |||  | | |  ||     |||||||||| ||| |   ||  | |  | |    |||   | | |         
GATCCATATTTTAGAATGACACGTGATGTTGCTCCTAAAATGGGTTTCCACAAGCCAGCCTTGATTGAATCATTATTCTTCCCAGCATTACAGgtatttttatgtcgcaaaaccatgctactttatcaaattgattaaagagagcaactaatattttacatgctgcta-atctaattaaacttttaattccctt--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27581897|gb|CB004592.1|CB004592
EST:     GATATCACAAGCCCGCATTGATTGAATCATTATTCTTCCCTGCCCTTCAG                         GGGGAGACAGGAAAAATGTCTGCTAGTGATCCCAATTCTGCAATATACGTG
genomic: GATATCACAAGCCCGCATTGATTGAATCATTATTCTTCCCTGCCCTTCAGgtgttattac ... atatctgcagGGGGAGACAGGAAAAATGTCTGCTAGTGATCCCAATTCTGCAATATACGTG
EST: gi|27582130|gb|CB004825.1|CB004825
EST:     GATATCACAAGCCCGCATTGATTGAATCATTATTCTTCCCTGCCCTTCAG                         GGGGAGACAGGAAAAATGTCTGCTAGTGATCCCAATTCTGCAATATACGTG
genomic: GATATCACAAGCCCGCATTGATTGAATCATTATTCTTCCCTGCCCTTCAGgtgttattac ... atatctgcagGGGGAGACAGGAAAAATGTCTGCTAGTGATCCCAATTCTGCAATATACGTG