1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTACCGGGCCCCAGAACTTATATTTGGTGCAACTGAATACACAACATCGATTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAGgttagtggctgtgagaaatttatattttgttgttaccaagaattttcccagtgttttttttaagttcattatttgcttagttgtatatcatttgcttactttcacaattgcaaatgtttggcag
species | Vitis vinifera |
transcript | Vv12s0028g01810.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAG CCCTTGTTTCCTGGAGAGAGTGCAGTAGACCAACTTGTTGAAATTATAAAGEST: gi|110725002|gb|EE101323.1|EE101323
genomic: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAGgttagtggct ... tgtttggcagCCCTTGTTTCCTGGAGAGAGTGCAGTAGACCAACTTGTTGAAATTATAAAG
EST: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAACTTCTACTAAGCCAC CCCTTGTTTTCTGGAAAGAGTGCAEST: gi|349830587|gb|FQ416885.1|FQ416885
genomic: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAGgttagtggct ... tgtttggcagCCCTTGTTTCCTGGAGAGAGTGCA
EST: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAG CCCCTTGTT-CCTGGAGAGAGTGCAGTAGACCAACTTEST: gi|27582878|gb|CB005573.1|CB005573
genomic: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAGgttagtggct ... tgtttggcagCCC-TTGTTTCCTGGAGAGAGTGCAGTAGACCAACTT
EST: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAG CCCTTGTTTCCTGGAGAGAGTGCAGTAGACCAACTTGTTGAAATTATAAAGEST: gi|33402557|gb|CF208184.1|CF208184
genomic: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAGgttagtggct ... tgtttggcagCCCTTGTTTCCTGGAGAGAGTGCAGTAGACCAACTTGTTGAAATTATAAAG
EST: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTACGCCAG CCCTTGTTTCCTGGAGAGAGTGCAGT-GATANAACTTGTTGAAATTATAAAEST: gi|351020144|gb|FQ445751.1|FQ445751
genomic: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAGgttagtggct ... tgtttggcagCCCTTGTTTCCTGGAGAGAGTGCAGTAGACC-AACTTGTTGAAATTATAAA
EST: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCCG CCCCTTGTTTCCTGGAGAGAGTGCAGTEST: gi|351036312|gb|FQ458687.1|FQ458687
genomic: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAGgttagtggct ... tgtttggcagCCC-TTGTTTCCTGGAGAGAGTGCAGT
EST: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAG CCCTTGTTTCCTGGAGAGAGTGCAGTAGACCAA
genomic: TTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAGgttagtggct ... tgtttggcagCCCTTGTTTCCTGGAGAGAGTGCAGTAGACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACCGGGCCCCAGAACTTATATTTGGTGCAACTGAATACACAACATCGATTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAGgttagtggctgtgagaaatttatattttgttgttaccaagaattttcccagtgttttttttaagttcattatttgcttagttgtatatcatttgcttactttcacaattgcaaatgtttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT