Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTACAGCCTTTTATACAGGCTTCCAGAGGAGAATGGGGTGAAGGCTGCCTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattccaatttcattatgttccaacttcagtgtatattattggttctatgcagtctctcattaccatttgatatatgagttcaaagagttttgcga...

Basic information

species Vitis vinifera
transcript Vv12s0028g01100.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g01100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G41630.1 (Glycine max), 5'ss of exon 7
AATTACAGCCTTTTATACAGGCTTCCAGAGGAGAATGGGGTGAAGGCTGCCTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattccaatttcattat-gttccaacttcagtgtatattattggttctatgcagtctctcattaccatttgatatatgagttcaaag-agttttgcga-
|| ||||| ||  | ||| || | || || || || || || |||||||||||||||||||||||| ||||  | |||||||||||||| ||||||||||||||| |||   ||||||||| |    |  || | | | |  ||||   | |||    | |    ||  ||||  | ||||  |   |||  ||       | 
AACTACAGTCTCATCTACCGGGTCCCTGAAGAAAACGGCGTAAAGGCTGCCTGTGATGAACTTGGGATTACAATAATTGCATATTCACCAATTGCTCAAGgtgaacttct--tttcattattgggatatgtttattatgt-ctattttatatatatttttttagttttgcattaaacatatctgccaaaaccagaggcataac

upper sequence: Vv12s0028g01100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G14510.1 (Glycine max), 5'ss of exon 7
AATTACAGCCTTTTATACAGGCTTCCAGAGGAGAATGGGGTGAAGGCTGCCTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattccaatttcattatgttccaacttcagtgtatattattggttctatgcagtctctcattaccatttgatatatgagttcaaag-agttttgcga-
|| ||||||||  | ||| ||   || || || ||||| || |||||||||||||||||||||||| | ||  | |||||||||||||| ||||||||||||||| | |   |||||||||     |  ||  || | | |  ||  |  | |        |  ||   |||| | ||||  |   |||  ||   |   | 
AACTACAGCCTCATCTACCGGGCCCCTGAAGAAAATGGTGTAAAGGCTGCCTGTGATGAACTTGGGATAACAATAATTGCATATTCACCAATTGCTCAAGgtgaactcct--tttcattattggatatgtttggtatgtctattttataatttttttaaatttttttaaatttaacatatctgccaaaaccagaggtataac

upper sequence: Vv12s0028g01100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G06690.1 (Arabidopsis thaliana), 5'ss of exon 7
AATTACAGCCTTTTATACAGGCTTCCAGAGGAGAATGGGGTGAAGGCTGCCTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattccaatttcattatgttccaacttcagtgtatattattggttctatgcagtctctcattaccatttgatatatgagttcaaagagttttgcga-----------------------------------------------
|| ||||| ||  |||||||   ||||||| ||| ||| || |||||||| |||||||| ||||| |||||||| ||||||||||| || || ||||||||| |  | ||  | ||    |         |   ||| |||  ||   |  |     |   |||    | | |  ||| |||    ||| |   | || |                                               
AACTACAGTCTGATATACAGAGCTCCAGAGCAGACTGGTGTTAAGGCTGCTTGTGATGAGCTTGGAGTTACTTTAATTGCATATTCCCCCATCGCTCAAGgtaatctgcctttatctcctttgcgttgtgttcatgtctatcgttctctagaaaagttgcatcaggctcttatagtat-tgacgcaaaacaacctggctaatgaacacatacattttccgttatttgctcttttgtcttttttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110381894|gb|EC937946.1|EC937946
EST:     CTGTGATGAACTTGGGGTTACTTTGAATGCATATTCACCTATTGCTCAAG                         GTGCTCTCACGGGGAAATATACG
genomic: CTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattcc ... acttatgcagGTGCTCTCACGGGGAAATATACG
EST: gi|26263992|gb|CA815055.1|CA815055
EST:     CTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAG                         GTGCTCTCACGGGGAAATATACGCCAGGCAATTCTCCCACTGGACCTCGAG
genomic: CTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattcc ... acttatgcagGTGCTCTCACGGGGAAATATACGCCAGGCAATCCTCCCACTGGACCTCGAG
EST: gi|110720549|gb|EE096568.1|EE096568
EST:     CTGTGATGAACTTGGGGTTACTTTGAGTGCATATTCACCTATTGCTCAAG                         GTGCTCTCACGGGGTAATATACGCCAGGCCATCCTCCCA
genomic: CTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattcc ... acttatgcagGTGCTCTCACGGGGAAATATACGCCAGGCAATCCTCCCA