1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAGgtatttggaattgattcagttttacaaatctaccaaagttgctattttttttttataagtaagcgataaattttaaagaccaaaaaaaaaaaaaaactat...
species | Vitis vinifera |
transcript | Vv11s0065g00450.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAG AATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTGEST: gi|110395278|gb|EC960936.1|EC960936
genomic: CGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAGgtatttggaa ... tgtcaagtagAATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTG
EST: TGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAG AATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTGEST: gi|33405732|gb|CF211359.1|CF211359
genomic: CGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAGgtatttggaa ... tgtcaagtagAATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTG
EST: TGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAG AATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTGEST: gi|110391622|gb|EC956610.1|EC956610
genomic: CGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAGgtatttggaa ... tgtcaagtagAATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTG
EST: TGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAG AATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTGEST: gi|351028718|gb|FQ433148.1|FQ433148
genomic: CGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAGgtatttggaa ... tgtcaagtagAATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTG
EST: TGATTCACGGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAG AATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTGEST: gi|22011495|gb|BQ796529.1|BQ796529
genomic: CGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAGgtatttggaa ... tgtcaagtagAATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTG
EST: CGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAG TEST: gi|22011495|gb|BQ796529.1|BQ796529
genomic: CGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAGgtatttggaa ... tgtcaagtag-
EST: CGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAG TEST: gi|110377829|gb|EC942921.1|EC942921
genomic: CGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAGgtatttggaa ... tgtcaagtag-
EST: TGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAG AATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTGEST: gi|161716363|gb|FC068095.1|FC068095
genomic: CGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAGgtatttggaa ... tgtcaagtagAATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTG
EST: TGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAG AATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTG
genomic: CGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAGgtatttggaa ... tgtcaagtagAATTCCTCGGTGAAGAAGAGCAGGATGTGTCAGGCCCAGTACAAATTTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCCAAAGGCTGAAGGCGATTCACAGTTATGCAACTCAGTGAACTACCACATCAATCGACCCTTAGgtatttggaattgattcagttttacaaatctaccaaagttgctattttttttttataagtaagcgataaattttaaagaccaaaaaaaaaaaaaaactat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa