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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAGCCAACTTTGAGTTCATTGAAAAGCTTGGAGTCGATCTATGGTGCTTCCATGACAGGGATATAGCCCCTGATGGTAAAACCCTGGAGgtgagtcaattttcaagattatttattgccatgatgatagtttttaagattcaatatcagaaatgaggggaatgtcggttgcttacatgtttgaattcctggaaagaatgaaaatgtttttgttatatatcctttccatactcttgaaatttgcataagtgatcatatttgataaatgatgcttgttacag

Basic information

species Vitis vinifera
transcript Vv11s0052g01710.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os07g47290.1 (Oryza sativa), 5'ss of exon 6
TGAGAGCCAACTTTGAGTTCATTGAAAAGCTTGGAGTCGATCTATGGTGCTTCCATGACAGGGATATAGCCCCTGATGGTAAAACCCTGGAGgtgagtcaattttcaagattatttattgccatgatgatagtttttaagattcaatatcagaaatgaggggaatgtcggttgcttacatgtttgaattcctggaaagaatgaaaatgtttttgttatatatcctttccatactcttgaaatttgcataagtgatcatatttgataaatgatgcttgttacag
|||||||  ||||||||||||| || ||||||||||| ||    ||||||||||||||||||||||| ||||||||||| ||||| ||   |||  | |    | ||  ||  | |  |    ||        | |   | ||  |  |    ||    | |  | | | |   |  ||||  |  |  | |||  |                                                                                      
TGAGAGCTCACTTTGAGTTCATGGAGAAGCTTGGAGTTGACAGGTGGTGCTTCCATGACAGGGATATTGCCCCTGATGGCAAAACACTCACGgtatgccttcatgcataatagtcttattatttgtcttcgaatgt---ggtttgaacttgtgaagctcgaggctatagctatttatcatgcct--acccttggtta--------------------------------------------------------------------------------------

upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AC190975.3_FGT004 (Zea mays), 5'ss of exon 3
TGAGAGCCAACTTTGAGTTCATTGAAAAGCTTGGAGTCGATCTATGGTGCTTCCATGACAGGGATATAGCCCCTGATGGTAAAACCCTGGAGgtgagtcaattttcaagattatttattgccatgatgatagtttttaagattcaatatcagaaatgaggggaatgtcggttgcttacatgtttg-aattcctggaaagaatgaaaatgtttttgttatatatcctttccatactcttgaaatttgcataagtgatcatatttgataaatgatgcttgttacag
|||||||  ||||||||||||| || ||| | ||||||||   |||||||||||||||||||||||| ||||| ||||| || || || || ||  ||| ||        || | || |      ||| || |   | | | |||  |  | || ||    |        |||||  ||     | ||||    | |                                                                                       
TGAGAGCTCACTTTGAGTTCATGGAGAAGTTGGGAGTCGACAAATGGTGCTTCCATGACAGGGATATTGCCCCGGATGGGAAGACACTTGAAgtatgtccatcagttgtgttgtatactt-----atgttaatgcatga-actcataagtataattggcttggtctcttattgctatcacagaagcaattttcagtat--------------------------------------------------------------------------------------

upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G005493_T01 (Zea mays), 5'ss of exon 6
TGAGAGCCAACTTTGAGTTCATTGAAAAGCTTGGAGTCGATCTATGGTGCTTCCATGACAGGGATATAGCCCCTGATGGTAAAACCCTGGAGgtgagtcaattttcaagattatttattgccatgatgatagtttttaagattcaatatcagaaatgaggggaatgtcggttgcttacatgtttgaattcctggaaagaatgaaaatgtttttgttatatatcctttccatactcttgaaatttgcataagtgatcatatttgataaatgatgcttgttacag
|||||||  ||||||||||||| || ||||| || || ||   ||||||||||||||| |||||||| ||||||||||| ||||| || || ||  |||  |        || | || | |  | |  | |     | | | | |  ||||| | ||     |  |  | |   || ||| |   || ||                                                                                             
TGAGAGCTCACTTTGAGTTCATGGAGAAGCTGGGGGTTGACAAATGGTGCTTCCATGATAGGGATATTGCCCCTGATGGGAAAACTCTCGAAgtatgtccttcagttgtgttgtatacttctgttaacacatgaactcaaaattataatcagca-tggtctcatggaagctgttttccatatgcaaactcaca------------------------------------------------------------------------------------------

upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G081682_T02 (Zea mays), 5'ss of exon 6
TGAGAGCCAACTTTGAGTTCATTGAAAAGCTTGGAGTCGATCTATGGTGCTTCCATGACAGGGATATAGCCCCTGATGGTAAAACCCTGGAGgtgagtcaattttcaagattatttattgccat-gatgatagtttttaagattcaatatcagaaatgaggggaatgtcggttgcttacatgtttgaattcctggaaagaatgaaaatgtttttgttatatatcctttccatactcttgaaatttgcataagtgatcatatttgataaatgatgcttgttacag
|||||||  ||||||||||||| || ||| | ||||| ||   |||||||||||||||||||||||| ||||| ||||| || || || || ||  ||| |||       || | || | |  |  |||   |   | |  | |||  |  | || ||    |        |||||  ||     | | |                                                                                              
TGAGAGCTCACTTTGAGTTCATGGAGAAGTTGGGAGTTGACAAATGGTGCTTCCATGACAGGGATATTGCCCCGGATGGGAAGACTCTTGAAgtatgtccattagttgtgttgtatacttctgttaatgcatgaactcattactcataagtataattggcttggtctgttattgctatcacagaagcaattt--------------------------------------------------------------------------------------------

upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G313536_T01 (Zea mays), 5'ss of exon 5
TGAGAGCCAACTTTGAGTTCATTGAAAAGCTTGGAGTCGATCTATGGTGCTTCCATGACAGGGATATAGCCCCTGATGGTAAAACCCTGGAGgtgagtcaattttcaagattatttattgccatgatgatagtttttaagattcaatatcagaaatgaggggaatgtcggttgcttacatgtttgaattcctggaaagaatgaaaatgtttttgttatatatcctttccatactcttgaaatttgcataagtgatcatatttgataaatgatgcttgttacag
|||||||  ||||||||||||| || ||| | |||||| |   |||||||||||||||||||||||| ||||| ||||| || || || || ||  ||| ||        || | || | |  |     || |   | | | |||  |  | || ||    |   ||| |||  |   ||    |||    |    || ||                                                                                  
TGAGAGCTCACTTTGAGTTCATGGAGAAGTTGGGAGTCAACAAATGGTGCTTCCATGACAGGGATATTGCCCCGGATGGGAAGACACTTGAAgtatgtccatcagttgtgttgtatacttctgt-----taatgcatga-actcataagtataattggcttg---gtctgttattgctatcgcagaagcaattttcagtat----------------------------------------------------------------------------------

upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G335948_T01 (Zea mays), 5'ss of exon 4
TGAGAGCCAACTTTGAGTTCATTGAAAAGCTTGGAGTCGATCTATGGTGCTTCCATGACAGGGATATAGCCCCTGATGGTAAAACCCTGGAGgtgagtcaattttcaagattatttattgccatgatgatagtttttaagattcaatatcagaaatgaggggaatgtcggttgcttacatgtttgaattcctggaaagaatgaaaatgtttttgttatatatcctttccatactcttgaaatttgcataagtgatcatatttgataaatgatgcttgttacag
|||||||  ||||||||||||| || ||| | |||||| |   ||||||||||||||| |||||||| ||||| ||||| || || || || ||  ||| ||        || | || | |  |     || |   | | | |||  |  | || ||    |   ||| |||  |   ||    |||    |    || ||                                                                                  
TGAGAGCTCACTTTGAGTTCATGGAGAAGTTGGGAGTCAACAAATGGTGCTTCCATGATAGGGATATTGCCCCGGATGGGAAGACACTTGAAgtatgtccatcagttgtgttgtatacttctgt-----taatgcatga-actcataagtataattggcttg---gtctgttattgctatcgcagaagcaattttcagtat----------------------------------------------------------------------------------

upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G07380.1 (Glycine max), 5'ss of exon 6
TGAGAGCCAACTTTGAGTTCATTGAAAAGCTTGGAGTCGATCTATGGTGCTTCCATGACAGGGATATAGCCCCTGATGGTAAAACCCTGGAGgtgagtcaattttcaagattatttattgccatgatgatagtttttaagattcaatatcagaa-atgagggg-aatgtcggttgcttacatgtttga-attcctggaaagaatgaaaatgtttttgttatatatcctttccatactcttgaaatttgcataagtgatcatatttgataaatgatgcttgttacag
||||||| ||||||||||||||    || || || || ||  | ||||| ||||| ||||||||||||||||||||||| ||||| || ||||||||||||| || ||| || || | |    | ||   | || |||     ||  |||| |    |||  | | || |   ||||||| | |||   ||  ||||||                                                                                       
TGAGAGCTAACTTTGAGTTCATAAGCAAACTCGGTGTTGACTTTTGGTGTTTCCACGACAGGGATATAGCCCCTGATGGAAAAACTCTTGAGgtgagtcaatatttaagtttcttcact----taattgcaattcttaga---caggatcaaagtgcgagatgcagtggcatatgcttaccttttttttatatctggaa---------------------------------------------------------------------------------------