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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCTTCAAACCAGCATCTATCCTGGAGAAGTAATATTCTCTATAGCTCTTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAGgtaaatgaagacctgttttgctttcattttttatttttttatgcatggataatctatagagtttttttataatcaatatttatttcctttattgggaact...

Basic information

species Vitis vinifera
transcript Vv11s0037g00230.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G36560.1 (Glycine max), 5'ss of exon 6
GGGGCTTCAAACCAGCATCTATCCTGGAGAAGTAATATTCTCTATAGCTCTTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAGgtaaatgaagacctgttttgctttcattttttatttttttatgcatggataatctatagagtttttttataatcaatatttatttcctttattgggaact-
|||||||||||| |||| ||||||||| || || || || || ||||| || || |||  ||| ||||| || ||||| |||||||||||||||||||||||| |     |    ||  ||||  |  | | ||     || |  ||    || | | |   ||   | |  |||  |  |  |    ||     |  || 
GGGGCTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGgtatacttcaaatcattgagctta-acatatcatgaaagtaaggttgctggatgtcttgtcattcagtttgttcagaacatgctggagtttccatgggctt

upper sequence: Vv11s0037g00230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G08120.1 (Glycine max), 5'ss of exon 6
GGGGCTTCAAACCAGCATCTATCCTGGAGAAGTAATATTCTCTATAGCTCTTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAGgtaaatgaagacctgttttgc---tttcattttttattt-----ttttatgcatggataatctatagagttttttt--ataa------tcaatatttatttcctttattggga-act------------------------------
||| |||||||| |||| ||||||||| || || || || || ||||| || || |||  ||| ||||| || ||||| |||||||||||||||||||||||| |     |    ||  ||   ||  |||||| | ||     | || |   | ||||    | |  |   ||    ||||      |  |  ||||| ||||  | |  || |||                              
GGGACTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGgtatacttcaaatcattgagcactttatatttttaagttcaaaatattgtttcttgatatcgcagaatggccttgcaaataaatagctttgaagtttatgtcctaaagtatgatactaagatctctgtctttttcccatgattacag

upper sequence: Vv11s0037g00230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G23890.1 (Glycine max), 5'ss of exon 6
GGGGCTTCAAACCAGCATCTATCCTGGAGAAGTAATATTCTCTATAGCTCTTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAGgta-aatgaagacctgttttgctttcattttttatttttttatgcatggataatctatagagtttttttataatcaatatttatttccttt--attgggaact
||||||| |||| |||| |||  |||| || ||  | || || ||||| || ||||||  ||| || || || ||||||||||||||||| |||||||||||| | | || | | |||    |  ||| |  |   |    ||  ||  ||  | | | |   ||||  |     | |   | |  ||| |  ||| | | | 
GGGGCTTGAAACAAGCACCTACACTGGGGAGGTTGTCTTTTCAATAGCACTAGCCATAGCTGGCCTTATCCTATTTGCACTTCTGATTGGTAACATGCAGgtatacttaaaatcagttaatttaacatgtgctgaataagaat--atcaatggtat-tgggtcttttgaaggggtattgggtctgacctatggatttgaatca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161713196|gb|FC063652.1|FC063652
EST:     TTGCCATTCTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAG                         ACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGG
genomic: TTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAGgtaaatgaag ... tctttgacagACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGG
EST: gi|110388758|gb|EC953541.1|EC953541
EST:     TTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAG                         ACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGG
genomic: TTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAGgtaaatgaag ... tctttgacagACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGG