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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTATCCAGAAGGGAAGATGAGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataacttgcaaggaattattcaataatttgccattttatcttctttgtactggacatatatttttcttgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g04970.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352794402|gb|FQ481633.1|FQ481633
EST:     GGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAAAAGTGAAAGG                         GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: gi|71884179|gb|DT033234.1|DT033234
EST:     GGTGACATTATAGAAGTGAAAGG                         GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
genomic: GGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: gi|110387459|gb|EC952124.1|EC952124
EST:     AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG                         GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: gi|110689922|gb|EE066580.1|EE066580
EST:     AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG                         GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: gi|33401973|gb|CF207600.1|CF207600
EST:     AGTCAGCATTTTTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG                         GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: gi|71883292|gb|DT032347.1|DT032347
EST:     GAAACCGGGTGACATTATAGAAGTGAAAGG                         GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
genomic: GAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: gi|161714699|gb|FC064483.1|FC064483
EST:     AGTCAGCATTTCTCACATTAGACACCGGGTGACATTATAGAAGTGAAAGG                         GCCCATTGAAAAGCTCACGTATACTCCAAATATGAAGAAACATATTGGCAT
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: gi|351034937|gb|FQ458294.1|FQ458294
EST:     AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG                         GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: gi|33402844|gb|CF208471.1|CF208471
EST:     CACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG                         GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
genomic: CACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: gi|33402755|gb|CF208382.1|CF208382
EST:     AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG                         GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: gi|110707462|gb|EE083887.1|EE083887
EST:     AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG                         GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAAC-AATTGGCAT
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
EST: gi|110728735|gb|EE104563.1|EE104563
EST:     AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGG                         GCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT
genomic: AGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataa ... tttcttgcagGCCCATTGAAAAGCTCAGGTATACTCCAAATATGAAGAAACAAATTGGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTATCCAGAAGGGAAGATGAGTCAGCATTTCTCACATTTGAAACCGGGTGACATTATAGAAGTGAAAGGgtaaacataacttgcaaggaattattcaataatttgccattttatcttctttgtactggacatatatttttcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT