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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTAAGGGGTACTTATGGCAGCTTCATTCAGCTTGCTACGTGCCTTGGCCTCATGGGGGCTCTGTTTATTGGAATCCCTGTCAAGGCAATTATTGGATGgtaagaagaagaattagatcctgcaatttttatagttgatattttagctttgaactatacttcctaacttatgggagctcag

Basic information

species Vitis vinifera
transcript Vv11s0016g03660.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03660.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G32510.1 (Glycine max), 5'ss of exon 7
TTGTAAGGGGTACTTATGGCAGCTTCATTCAGCTTGCTACGTGCCTTGGCCTCATGGGGGCTCTGTTTATTGGAATCCCTGTCAAGGCAATTATTGGATGgta--agaagaa----gaattagatcctgcaatt-tttatagttgatattttagctttgaactatacttcctaacttatgggagctcag
||||  |||| || | |||    ||||| ||| |||| || |||||||| || ||||| ||| | |||||||||||||||||||| | ||||  |||||||||  | | |||    |  | |  || ||   || | |||  || ||   | |  ||| ||  || |  ||| | || |   | |  ||
TTGTGCGGGGCACCTTTGGAGCTTTCATCCAGATTGCAACATGCCTTGGTCTAATGGGAGCTTTATTTATTGGAATCCCTGTCAAAGAAATTTCTGGATGgtatcatacgaatcttgcttcatgtcatgatgttatatattatttattcatgatgttttaaaaattcaccctgaattttttca-catag

upper sequence: Vv11s0016g03660.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G09270.3 (Glycine max), 5'ss of exon 7
TTGTAAGGGGTACTTATGGCAGCTTCATTCAGCTTGCTACGTGCCTTGGCCTCATGGGGGCTCTGTTTATTGGAATCCCTGTCAAGGCAATTATTGGATGgtaaga-agaagaattagatcctgcaat----ttttata--gttgatattttagctttgaactatacttcctaacttatgggagctcag
||||  |||| || | |||    ||||| ||| |||| || |||||||| || ||||| ||| | |||||||||||||||||||| | |||   |||||||||  | |  |   |||  || ||  ||    || ||||   || ||   | |  ||| ||  || |  ||| | || |   | |  ||
TTGTGCGGGGCACCTTTGGAGCTTTCATCCAGATTGCCACATGCCTTGGTCTAATGGGAGCTTTATTTATTGGAATCCCTGTCAAAGAAATATCTGGATGgtatcatatgaatcttacttcatgtcatgatgttatatattatttattcatgatgttttaaaaattcaccctgaattttttca-catag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712692|gb|FC062264.1|FC062264
EST:     CTCATGGGGGCTCTGTTTATTGGAATCCCTGTCAAGGCAATTATTGGATG                         GTGGCGCATTTGTTTTTGGATAGCTACAGTTCCAGCTGGAATACTTGCTTT
genomic: CTCATGGGGGCTCTGTTTATTGGAATCCCTGTCAAGGCAATTATTGGATGgtaagaagaa ... gggagctcagGTGGCGCATTTGTTTTTGGATAGCTACAGTTCCAGCTGGAATACTTGCTTT