1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTCAAGGGGAGAGGAATTGTATATTTCCTGAAGACCCTGGCCAGgtatgctttattggatctattgctcttcaaaggcgtttagagaagcttgcatttgaaaaagctaccaattctactgcttgctcttttagaaaaaaggaag...
species | Vitis vinifera |
transcript | Vv11s0016g03560.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTCAAGGGGAGAGGAATTGTATATTTCCTGAAGACCCTGGCCAG CTGTTGAATGATAACGGCATGAAGAGGAAAGGAGCTTCCGACCAGEST: gi|30329176|gb|CD012438.1|CD012438
genomic: GTTCAAGGGGAGAGGAATTGTATATTTCCTGAAGACCCTGGCCAGgtatgcttta ... gtctcactagCTGTTGAATGATAACGGCATGAAGAGGAAAGGAGCTTCCGACCAG
EST: ATTTCCTGAAGTCCCTGGCCAG CTGTTGAATGATAACGGCATGAAGAGGAAAGGAGCTTCCGTCCAG
genomic: ATTTCCTGAAGACCCTGGCCAGgtatgcttta ... gtctcactagCTGTTGAATGATAACGGCATGAAGAGGAAAGGAGCTTCCGACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCAAGGGGAGAGGAATTGTATATTTCCTGAAGACCCTGGCCAGgtatgctttattggatctattgctcttcaaaggcgtttagagaagcttgcatttgaaaaagctaccaattctactgcttgctcttttagaaaaaaggaag
- - - - GAGAGG
- - - - - AGAGGA
- - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa