1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGGAGACATTGTACGCAGAGTCTTGTGTCGTATGGCTGAAGAAGCTGACCTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAGgtaattcctttattttttatgggcttcccattcaaaaactcatctttttggcccaggacaaagaatattgatgcatattgacctttataacaatgatata...
species | Vitis vinifera |
transcript | Vv11s0016g03070.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTTTTGGGTACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAG GACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGEST: gi|110687027|gb|EE064076.1|EE064076
genomic: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAGgtaattcctt ... aaatatttagGACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTG
EST: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAG GACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGTEST: gi|110713107|gb|EE088738.1|EE088738
genomic: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAGgtaattcctt ... aaatatttagGACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGT
EST: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAG GACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGTEST: gi|110410290|gb|EC975970.1|EC975970
genomic: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAGgtaattcctt ... aaatatttagGACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGT
EST: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAG GACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGTEST: gi|110377656|gb|EC942735.1|EC942735
genomic: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAGgtaattcctt ... aaatatttagGACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGT
EST: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAG GACTCCTGACATGTCAGCGATGCCATCACGATACATCTCCTGATCTGAGGGEST: gi|110377552|gb|EC942625.1|EC942625
genomic: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAGgtaattcctt ... aaatatttagGACTCCTGACATGTCAGCGATGC-ATCACGATACATCTCCTGATCTGAGGG
EST: TTTCATATTAAG GACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGTEST: gi|110723174|gb|EE100188.1|EE100188
genomic: TTTCATATTAAGgtaattcctt ... aaatatttagGACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGT
EST: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAG GACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGTEST: gi|110362857|gb|EC926415.1|EC926415
genomic: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAGgtaattcctt ... aaatatttagGACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGT
EST: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAG GACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGT
genomic: CTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAGgtaattcctt ... aaatatttagGACTCCTGACATGTCAGCGATGCATCACGATACATCTCCTGATCTGAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGAGACATTGTACGCAGAGTCTTGTGTCGTATGGCTGAAGAAGCTGACCTTTTTGGGGACACTGTTCCACCAAAACTGAAAATTCCTTTCATATTAAGgtaattcctttattttttatgggcttcccattcaaaaactcatctttttggcccaggacaaagaatattgatgcatattgacctttataacaatgatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaatga