Sequence
atgc intronic sequence ATGC exonic sequenceTCAGCTGATGATCTACGCATAAACCTTTGGAACCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTGAAGCCTACTAACATGGAGGATCTGACTGgtacggatttttagtcctctttcatgatttgttctactagttttgtcttccttttttgtcatctcttctggcatgtacttcaggtggtgttgatattttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 7
TCAGCTGATGATCTACGCATAAACCTTTGGAACCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTGAAGCCTACTAACATGGAGGATCTGACTGgtacggatttttagtcctctttca-tgatttgttctactagttttgtcttccttttttgtcatctcttctggcatgtacttcaggtgg-tgttgatattttg--
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TCAGCAGATGATCTGCGAATAAATCTTTGGAACCTGGAAATTAGCAACCAAAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTGgta-aattttccagtgtgagataagctaggcatgctg-tggatttgccatttggcttc--cagttagttttaaatgttaaacacacgaatgctatctaattggt
upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 7
TCAGCTGATGATCTACGCATAAACCTTTGGAACCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTGAAGCCTACTAACATGGAGGATCTGACTGgtacggatttttagtcctc--tttcatgatttgttctactagttt-tgtcttccttttttgtcatctcttctggcatgtacttcaggtggtgttg-atattttg
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TCAGCAGATGATTTGCGGATAAATCTTTGGAATTTGGAAATTAGCAACCAAAGTTTTAACATTATTGATGTTAAACCTACAAACATGGAGGACCTGACTGgtataactttcaaatcttcaaactcttagctatgctgactagtgagtattaacatatacagccttttctcacacaatgggaaaaaaatgcagtcctatat----
upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATCTACGCATAAACCTTTGGAACCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTGAAGCCTACTAACATGGAGGATCTGACTGgtacggatttttagtcctctttcatgatttgttctactagttttgtcttccttttttgtcatctcttctggcatgtacttcaggtggtgt---tgatattttg---
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TCAGCTGATGATTTGCGGATAAATCTTTGGAATTTGGAAATCAGCAATCAAAGTTTCAATATTATTGATGTTAAGCCTACAAACATGGAAGATCTCACTGgtataacttccaaacc----tacaaagtatttcctatctgtgctga-ttatgtgtgtgataggtcata-gatgtgaaaataagaaaatatactcaagaagttgcaa
upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATCTACGCATAAACCTTTGGAACCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTGAAGCCTACTAACATGGAGGATCTGACTGgtacggatttttagtcctctttcatgatttgttctactagttttgtcttcc-ttttttgtcatctcttctggcatgtacttcaggtggtgttgatattttg--
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TCAGCAGATGATCTGCGAATAAACCTTTGGAATTTAGAAATTAGCAATCAGAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTGgtaaacttttttcagtctgataactaatt-gcggtgtgcactgagcttcctgtttcctgtaaacattaatgttat-cagactaggtag-attcacagtcaagt
upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATCTACGCATAAACCTTTGGAACCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTGAAGCCTACTAACATGGAGGATCTGACTGgtacggatttttagtcctctttcatgatttgttctactagttttgtcttccttttttgtcatctcttctggca--tgtacttcaggtggtgttgatattttg
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TCAGCTGATGATTTGCGGATAAATCTATGGAATTTGGAAATCAGCAATCAAAGTTTCAATATTATTGATGTTAAGCCTACAAACATGGAAGATCTCACCGgtataacttctaaacctacaaactttcttatctgtgctgattatgtgtgtgataggtcataggtgtgaaagaaaatatacataagggaacaa-gttgtttt-
upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 8
TCAGCTGATGATCTACGCATAAACCTTTGGAACCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTGAAGCCTACTAACATGGAGGATCTGACTGgtacggatttttagtc----ctctttcatgatttgttctactagttttgtcttccttttttgtcatctcttctggc-atgtacttcaggtggtgttgatattttg
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TCAGCAGATGATCTCCGAATAAATTTATGGAACTTGGAAATAAACAGCCAGAGCTTTAACATTGTTGATGTGAAGCCTACAAACATGGAAGATCTAACAGgtaattccacttagtcataatttttttaacatttatcctaagtgttgcaaatttacttgatgaagttttgccttcccatttaacaaaaaagagattgcaa-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71860554|gb|DT009609.1|DT009609EST: AAGTTTCAATATTGTTGATGTGAAGCCTACTAACATGGAGGATCTGACTG AAGTGATAACATCCGCTGAATTCCACCCTACACACTGTAATATGTTGGCAT
genomic: AAGTTTCAATATTGTTGATGTGAAGCCTACTAACATGGAGGATCTGACTGgtacggattt ... acacatgcagAAGTGATAACATCCGCTGAATTCCACCCTACACACTGTAATATGTTGGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAGCTGATGATCTACGCATAAACCTTTGGAACCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTGAAGCCTACTAACATGGAGGATCTGACTGgtacggatttttagtcctctttcatgatttgttctactagttttgtcttccttttttgtcatctcttctggcatgtacttcaggtggtgttgatattttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT