1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCATGCTGAAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAAgtgagcatttgtcacttaatttatttatggttttcattagcatcatgcacatgattttctgatagatacaagtgaagtcacagacttggacaaaatggta...
species | Vitis vinifera |
transcript | Vv11s0016g00830.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAA GGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACTEST: gi|110409927|gb|EC975602.1|EC975602
genomic: AAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAAgtgagcattt ... ccaactgcagGGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACT
EST: AAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAA GGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACTEST: gi|110363814|gb|EC927433.1|EC927433
genomic: AAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAAgtgagcattt ... ccaactgcagGGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACT
EST: AGGAATTTTACTGAGGGCCTATTGCACAGAAGACACGTCCATTCAACCAA GGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACTEST: gi|110391575|gb|EC956560.1|EC956560
genomic: AGGAATTTTACTGAGGGCCTATTGCACAG-AGACACGTCCATTCAACCAAgtgagcattt ... ccaactgcagGGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACT
EST: TTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAA GGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACTEST: gi|110420049|gb|EC986310.1|EC986310
genomic: TTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAAgtgagcattt ... ccaactgcagGGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACT
EST: AAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAA GGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACTEST: gi|110366059|gb|EC929706.1|EC929706
genomic: AAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAAgtgagcattt ... ccaactgcagGGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACT
EST: AAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAA GGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACT
genomic: AAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAAgtgagcattt ... ccaactgcagGGATCCAGGCTTACAGCTTTTGAGTTGGTGCATGATAATATACCTGCTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCATGCTGAAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAAgtgagcatttgtcacttaatttatttatggttttcattagcatcatgcacatgattttctgatagatacaagtgaagtcacagacttggacaaaatggta
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaa