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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATGGAATACTACAATAAATTGGAAGACCCAACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAACgtgggtctttgttaccatgaacctgaaacgaattcttactcaatattcaaaactaaatggagttctatttttggggctttgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g00530.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00530.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G17370.2 (Glycine max), 5'ss of exon 6
GACATGGAATACTACAATAAATTGGAAGACCCAACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAACgtgggtctttgttaccatgaacctgaaac---gaattcttactcaatattca----------aaactaaatggagttctatttttggggctttgcag
||| | ||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |    | | |||||| ||  |     |||| |   |     ||            ||| |||     |    ||||| ||  || |||||
GACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACgtgagtttcctat-ctatgaacttgggatttgaaattttcgttttccgtttttgtccgcctcaaattaagcattgactaattttgggaactatgcag

upper sequence: Vv11s0016g00530.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G07780.1 (Glycine max), 5'ss of exon 5
GACATGGAATACTACAATAAATTGGAAGACCCAACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAACgtgggtctttgttaccatgaacctgaaac--gaattctta---ctcaatattca--------aaactaaatggagttctatttttggggctttgcag
||| ||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |    | |||||||| |   |   ||| | ||     ||  | ||          ||| |  |    |    ||||| ||  || |||||
GACTTGGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACgtgagtttcctgt-ccatgaacttaggatttgaaattttggttttccgtttttgtccccctcaaattcgaccttgactaattttgggaactatgcag

upper sequence: Vv11s0016g00530.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G05130.1 (Glycine max), 5'ss of exon 6
GACATGGAATACTACAATAAATTGGAAGACCCAACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAACgtgggtctttgttaccatgaacctgaaac---gaattcttactcaatattca----------aaactaaatggagttctatttttggggctttgcag
||| | ||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| || |    | | |||||| ||  |     |||| |   |     ||            ||| | ||    |    | ||||||  || |||||
GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTCACTGAAACgtgagtttcctat-ctatgaacttgggatttgaaattttcgttttccgtttttgtccccctcaaattcaaccttgactaaattttggaactatgcag

upper sequence: Vv11s0016g00530.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G05450.1 (Arabidopsis thaliana), 5'ss of exon 7
GACATGGAATACTACAATAAATTGGAAGACCCAACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAACgt--gggtctttgttaccat------gaacctgaaac--gaattcttactcaatattcaaaactaaatggagt-tctatttttggg---gctttgcag
|| |  |||||||| || ||| | ||||| ||||| ||||| || ||||| ||| | ||||| ||||||||||| ||||||||||   |  || | ||||  |       |||   ||||  ||| ||| | |   || |  ||    || | |   | | ||   ||       || |||
GATACTGAATACTATAACAAACTTGAAGAACCAACAGATGAAGAGAATGATATGCTTGATCTTGCTTTTGGGCTCACAGAAACgtaaagtcctctcttactcttaaagcaaacacaaaacaagaagtctaattgtttactttaatgagaaagtatcatatgttcccggacaaatgtttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110379961|gb|EC945192.1|EC945192
EST:     ACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAAC                         GTCACGTCTGGGTTGTCAAGTGATTGCATCACCTGAACTCGATGGAATGCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAACgtgggtcttt ... ggctttgcagGTCGCGTCTGGGTTGTCAAGTGATTGCATCACCTGAACTCGATGGAATGCG
EST: gi|30252686|gb|CB970237.1|CB970237
EST:     ACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAAC                         GTCACGTCTGGGTTGTCAAGTGATTGCATCACCTGAACTCGATGGAATGCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAACgtgggtcttt ... ggctttgcagGTCGCGTCTGGGTTGTCAAGTGATTGCATCACCTGAACTCGATGGAATGCG
EST: gi|71887854|gb|DT036909.1|DT036909
EST:     ACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAAC                         GTCACGTCTGGGTTGTCAAGTGATTGCATCACCTGAACTCGATGGAATGCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAACgtgggtcttt ... ggctttgcagGTCGCGTCTGGGTTGTCAAGTGATTGCATCACCTGAACTCGATGGAATGCG